Fuzzy Hierarchical Analysis

Author(s):  
J. J. Buckley ◽  
V. R. R. Uppuluri
Genetics ◽  
1996 ◽  
Vol 142 (2) ◽  
pp. 629-639 ◽  
Author(s):  
Kent E Holsinger ◽  
Roberta J Mason-Gamer

Abstract Existing methods for analyzing nucleotide diversity require investigators to identify relevant hierarchical levels before beginning the analysis. We describe a method that partitions diversity into hierarchical components while allowing any structure present in the data to emerge naturally. We present an unbiased version of Nei's nucleotide diversity statistics and show that our modification has the same properties as Wright's  F  ST. We compare its statistical properties with several other F  ST estimators, and we describe how to use these statistics to produce a rooted tree of relationships among the sampled populations in which the mean time to coalescence of haplotypes drawn from populations belonging to the same node is smaller than the mean time to coalescence of haplotypes drawn from populations belonging to different nodes. We illustrate the method by applying it to data from a recent survey of restriction site variation in the chloroplast genome of Coreopsis grandiflora.


2009 ◽  
Vol 69 (2) ◽  
pp. 375-380 ◽  
Author(s):  
MF. Manica-Cattani ◽  
J. Zacaria ◽  
G. Pauletti ◽  
L. Atti-Serafini ◽  
S. Echeverrigaray

Twenty-seven accessions of Lippia alba Mill. collected in Rio Grande do Sul state, Brazil, were analysed by ISSR and RAPD markers to evaluate their genetic variability and relationships. Six ISSR primers and four RAPD primers generated 120 amplified fragments, most of which were polymorphics. The overall genetic variability among accessions was very high when compared with other plant species. The hierarchical analysis of molecular data (UPGMA) showed low relationship between accessions, and no grouping between accessions of the same chemotype. Canonical functions allowed identifying some variables related with the chemical characteristics of the essential oils. Both ISSR and RAPD markers were efficient to address the genetic diversity of L. alba, and may contribute to the conservation and breeding of this increasingly important aromatic and medicinal species.


Author(s):  
Witold A. Pleskacz ◽  
Maksim Jenihhin ◽  
Jaan Raik ◽  
Michal Rakowski ◽  
Raimund Ubar ◽  
...  

Energy Policy ◽  
2008 ◽  
Vol 36 (3) ◽  
pp. 991-998 ◽  
Author(s):  
Décio Cicone ◽  
Miguel Edgar Morales Udaeta ◽  
José Aquiles Baesso Grimoni ◽  
Luiz Cláudio Ribeiro Galvão

1993 ◽  
Vol 98 (4) ◽  
pp. 2614-2641 ◽  
Author(s):  
Michael J. Davis

Evolution ◽  
1996 ◽  
Vol 50 (6) ◽  
pp. 2187 ◽  
Author(s):  
Robert C. Lacy ◽  
Glen Alaks ◽  
Allison Walsh

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