Causal Biological Network Database: A Comprehensive Platform of Causal Biological Network Models Focused on the Pulmonary and Vascular Systems

2015 ◽  
pp. 65-93 ◽  
Author(s):  
Marja Talikka ◽  
Stephanie Boue ◽  
Walter K. Schlage
Keyword(s):  
Biological Network ◽  
Network Models ◽  
Network Database

scholarly journals Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems

Database ◽  
2015 ◽  
Vol 2015 ◽  
Author(s):  
Stéphanie Boué ◽  
Marja Talikka ◽  
Jurjen Willem Westra ◽  
William Hayes ◽  
Anselmo Di Fabio ◽  
...  
Keyword(s):  
Biological Network ◽  
Network Models ◽  
Network Database

scholarly journals Construction of a Suite of Computable Biological Network Models Focused on Mucociliary Clearance in the Respiratory Tract

2019 ◽  
Vol 10 ◽  
Author(s):  
Hasmik Yepiskoposyan ◽  
Marja Talikka ◽  
Stefano Vavassori ◽  
Florian Martin ◽  
Alain Sewer ◽  
...  
Keyword(s):  
Respiratory Tract ◽  
Mucociliary Clearance ◽  
Biological Network ◽  
Network Models

scholarly journals Reconstruction of biological networks based on life science data integration

2010 ◽  
Vol 7 (2) ◽  
Author(s):  
Benjamin Kormeier ◽  
Klaus Hippe ◽  
Patrizio Arrigo ◽  
Thoralf Töpel ◽  
Sebastian Janowski ◽  
...  
Keyword(s):  
Cardiovascular Disease ◽  
Data Integration ◽  
Biological Networks ◽  
Life Science ◽  
Biological Network ◽  
Network Models ◽  
Biological Data ◽  
Science Data ◽  
Biological Data Integration

SummaryFor the implementation of the virtual cell, the fundamental question is how to model and simulate complex biological networks. Therefore, based on relevant molecular database and information systems, biological data integration is an essential step in constructing biological networks. In this paper, we will motivate the applications BioDWH - an integration toolkit for building life science data warehouses, CardioVINEdb - a information system for biological data in cardiovascular-disease and VANESA- a network editor for modeling and simulation of biological networks. Based on this integration process, the system supports the generation of biological network models. A case study of a cardiovascular-disease related gene-regulated biological network is also presented.

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