sRNAtoolboxVM: Small RNA Analysis in a Virtual Machine

2017 ◽  
pp. 149-174 ◽  
Author(s):  
Cristina Gómez-Martín ◽  
Ricardo Lebrón ◽  
Antonio Rueda ◽  
José L. Oliver ◽  
Michael Hackenberg
Keyword(s):  
Virtual Machine ◽  
Small Rna ◽  
Rna Analysis

scholarly journals Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and Nodules

2009 ◽  
Vol 21 (9) ◽  
pp. 2780-2796 ◽  
Author(s):  
Christine Lelandais-Brière ◽  
Loreto Naya ◽  
Erika Sallet ◽  
Fanny Calenge ◽  
Florian Frugier ◽  
...  
Keyword(s):  
Medicago Truncatula ◽  
Small Rna ◽  
Rna Analysis ◽  
Genome Wide

Small RNA analysis provides new insights into cytoplasmic incompatibility in Drosophila melanogaster induced by Wolbachia

2019 ◽  
Vol 118 ◽  
pp. 103938 ◽  
Author(s):  
Ya Zheng ◽  
Wei Shen ◽  
Jie Bi ◽  
Meng-Yan Chen ◽  
Rui-Fang Wang ◽  
...  
Keyword(s):  
Drosophila Melanogaster ◽  
Small Rna ◽  
Cytoplasmic Incompatibility ◽  
Rna Analysis

scholarly journals Protocol: low cost fast and efficient generation of molecular tools for small RNA analysis

Plant Methods ◽  
2020 ◽  
Vol 16 (1) ◽  
Author(s):  
Diego López-Márquez ◽  
Ángel Del-Espino ◽  
Eduardo R. Bejarano ◽  
Carmen R. Beuzón ◽  
Javier Ruiz-Albert
Keyword(s):  
Small Rna ◽  
Low Cost ◽  
Molecular Tools ◽  
Rna Analysis ◽  
Efficient Generation

scholarly journals DSAP: deep-sequencing small RNA analysis pipeline

2010 ◽  
Vol 38 (suppl_2) ◽  
pp. W385-W391 ◽  
Author(s):  
Po-Jung Huang ◽  
Yi-Chung Liu ◽  
Chi-Ching Lee ◽  
Wei-Chen Lin ◽  
Richie Ruei-Chi Gan ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Small Rna ◽  
Analysis Pipeline ◽  
Rna Analysis

scholarly journals Small RNA analysis using the Genome Sequencer™ FLX system

2007 ◽  
Vol 4 (4) ◽  
pp. v-vi ◽  
Author(s):  
Thomas Jarvie ◽  
Timothy Harkins
Keyword(s):  
Small Rna ◽  
Rna Analysis

scholarly journals Highly Divergent Neuropeptide - non-coding RNA regulatory networks underpin variant host-finding behaviours in Steinernema species infective juveniles

2020 ◽  
Author(s):  
Neil D. Warnock ◽  
Erwan Atcheson ◽  
Ciaran McCoy ◽  
Johnathan J. Dalzell
Keyword(s):  
Gene Expression ◽  
Small Rna ◽  
Regulatory Networks ◽  
Host Finding ◽  
Protein Coding ◽  
Rna Analysis ◽  
New Family ◽  
Non Coding Rna ◽  
Non Coding Rnas ◽  
Shared Gene

AbstractWe conducted a transcriptomic and small RNA analysis of infective juveniles (IJs) from three behaviourally distinct Steinernema species. Substantial variation was found in the expression of shared gene orthologues, revealing gene expression signatures that correlate with behavioural states. 97% of predicted microRNAs are novel to each species. Surprisingly, our data provide evidence that isoform variation can effectively convert protein-coding neuropeptide genes into non-coding transcripts, which may represent a new family of long non-coding RNAs. These data suggest that differences in neuropeptide gene expression, isoform variation, and small RNA interactions could contribute to behavioural differences within the Steinernema genus.

scholarly journals Plant ARGONAUTE Protein Immunopurification for Pathogen Cross Kingdom Small RNA Analysis

BIO-PROTOCOL ◽  
2021 ◽  
Vol 11 (3) ◽  
Author(s):  
Florian Dunke ◽  
Bernhard Lederer ◽  
Arne Weiberg
Keyword(s):  
Small Rna ◽  
Argonaute Protein ◽  
Rna Analysis

scholarly journals De Novo Transcriptome and Small RNA Analysis of Two Chinese Willow Cultivars Reveals Stress Response Genes in Salix matsudana

PLoS ONE ◽  
2014 ◽  
Vol 9 (10) ◽  
pp. e109122 ◽  
Author(s):  
Guodong Rao ◽  
Jinkai Sui ◽  
Yanfei Zeng ◽  
Caiyun He ◽  
Aiguo Duan ◽  
...  
Keyword(s):  
Stress Response ◽  
Small Rna ◽  
De Novo ◽  
De Novo Transcriptome ◽  
Rna Analysis ◽  
Stress Response Genes ◽  
Salix Matsudana

Small RNA analysis of Perna viridis after exposure to Prorocentrum lima, a DSP toxins-producing dinoflagellate

2021 ◽  
pp. 105950
Author(s):  
Jia-hui Huang ◽  
Yu-hu Jiao ◽  
Li Li ◽  
Da-wei Li ◽  
Hong-ye Li ◽  
...  
Keyword(s):  
Small Rna ◽  
Perna Viridis ◽  
Prorocentrum Lima ◽  
Rna Analysis ◽  
Dsp Toxins

scholarly journals Small-RNA analysis of pre-basic mother plants and conserved accessions of plant genetic resources for the presence of viruses

PLoS ONE ◽  
2019 ◽  
Vol 14 (8) ◽  
pp. e0220621
Author(s):  
Minna-Liisa Rajamäki ◽  
Anne Lemmetty ◽  
Jaana Laamanen ◽  
Elina Roininen ◽  
Archana Vishwakarma ◽  
...  
Keyword(s):  
Genetic Resources ◽  
Small Rna ◽  
Plant Genetic Resources ◽  
Rna Analysis ◽  
Mother Plants
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