Predicting DNA Duplex Stability on Oligonucleotide Arrays

Combining enhanced π-stacking, H-bonding and electrostatic attraction in a single C-monomer greatly increases DNA duplex stability and massively destabilises mismatches.

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NMR Studies of Backbone-Alkylated DNA: Duplex Stability, Absolute Stereochemistry, and Chemical Shift Anomalies of Prototypal Isopropyl Phosphotriester Modified Octanucleotides, (Rp,Rp)- and (Sp,Sp)-{d-[GGA(iPr)ATTCC]}2and - {d- [GGAA(iPr)TTCC]}2

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.1987.10507677 ◽

1987 ◽

Vol 4 (5) ◽

pp. 757-783 ◽

Cited By ~ 7

Author(s):

Donald P. Lawrence ◽

Chen Wenqiao ◽

Gerald Zon ◽

Wojciech J. Stec ◽

Bogdan Uznanski ◽

...

Keyword(s):

Chemical Shift ◽

Dna Duplex ◽

Nmr Studies ◽

Duplex Stability ◽

Absolute Stereochemistry

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Effective Modulation of DNA Duplex Stability by Reversible Transition Metal Complex Formation in the Minor Groove

Journal of the American Chemical Society ◽

10.1021/ja071076z ◽

2007 ◽

Vol 129 (30) ◽

pp. 9392-9400 ◽

Cited By ~ 50

Author(s):

Marcin Kalek ◽

Andreas S. Madsen ◽

Jesper Wengel

Keyword(s):

Complex Formation ◽

Transition Metal ◽

Metal Complex ◽

Transition Metal Complex ◽

Minor Groove ◽

Dna Duplex ◽

Reversible Transition ◽

Duplex Stability

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Effects of Polyethylene Glycol on DNA Duplex Stability at Different NaCl Concentrations

Bulletin of the Chemical Society of Japan ◽

10.1246/bcsj.80.1987 ◽

2007 ◽

Vol 80 (10) ◽

pp. 1987-1994 ◽

Cited By ~ 20

Author(s):

Hisae Karimata ◽

Shu-ichi Nakano ◽

Naoki Sugimoto

Keyword(s):

Polyethylene Glycol ◽

Dna Duplex ◽

Duplex Stability

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The Effect of Molecular Crowding with Nucleotide Length and Cosolute Structure on DNA Duplex Stability

Journal of the American Chemical Society ◽

10.1021/ja0463029 ◽

2004 ◽

Vol 126 (44) ◽

pp. 14330-14331 ◽

Cited By ~ 157

Author(s):

Shu-ichi Nakano ◽

Hisae Karimata ◽

Tatsuo Ohmichi ◽

Junji Kawakami ◽

Naoki Sugimoto

Keyword(s):

Molecular Crowding ◽

Dna Duplex ◽

Duplex Stability

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Stepwise “Click” Chemistry for the Template Independent Construction of a Broad Variety of Cross-Linked Oligonucleotides: Influence of Linker Length, Position, and Linking Number on DNA Duplex Stability

The Journal of Organic Chemistry ◽

10.1021/jo2004988 ◽

2011 ◽

Vol 76 (14) ◽

pp. 5584-5597 ◽

Cited By ~ 37

Author(s):

Hai Xiong ◽

Frank Seela

Keyword(s):

Click Chemistry ◽

Dna Duplex ◽

Linker Length ◽

Linking Number ◽

Duplex Stability ◽

Broad Variety

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DNA duplex stability as discriminative characteristic for Escherichia coli σ54- and σ28- dependent promoter sequences

Biologicals ◽

10.1016/j.biologicals.2013.10.001 ◽

2014 ◽

Vol 42 (1) ◽

pp. 22-28 ◽

Cited By ~ 15

Author(s):

Scheila de Avila e Silva ◽

Franciele Forte ◽

Ivaine T.S. Sartor ◽

Tahila Andrighetti ◽

Günther J.L. Gerhardt ◽

...

Keyword(s):

Escherichia Coli ◽

Dna Duplex ◽

Promoter Sequences ◽

Duplex Stability

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DNA Duplex Stability of the Thio-Iso-Guanine•Methyl-Iso-Cytosine Base Pair

Nucleosides Nucleotides & Nucleic Acids ◽

10.1080/15257770.2015.1013127 ◽

2015 ◽

Vol 34 (6) ◽

pp. 424-432 ◽

Cited By ~ 2

Author(s):

Dongkye Lee ◽

Christopher Switzer

Keyword(s):

Base Pair ◽

Dna Duplex ◽

Duplex Stability

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Effect of Methyl Group on Acyclic Serinol Scaffold for Tethering Dyes on the DNA Duplex Stability

ChemBioChem ◽

10.1002/cbic.201600558 ◽

2016 ◽

Vol 18 (1) ◽

pp. 142-149 ◽

Cited By ~ 2

Author(s):

Keiji Murayama ◽

Hiroyuki Asanuma

Keyword(s):

Dna Duplex ◽

Methyl Group ◽

Duplex Stability

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