Ingeneue: A Software Tool to Simulate and Explore Genetic Regulatory Networks

2009 ◽  
pp. 169-200 ◽  
Author(s):  
Kerry J. Kim
Keyword(s):  
Regulatory Networks ◽  
Software Tool ◽  
Genetic Regulatory Networks

DIZZY: STOCHASTIC SIMULATION OF LARGE-SCALE GENETIC REGULATORY NETWORKS

2005 ◽  
Vol 03 (02) ◽  
pp. 415-436 ◽  
Author(s):  
STEPHEN RAMSEY ◽  
DAVID ORRELL ◽  
HAMID BOLOURI
Keyword(s):  
Regulatory Networks ◽  
Large Scale ◽  
Software Tool ◽  
Genetic Regulatory Networks ◽  
Signaling Networks ◽  
Simulation Framework ◽  
Kinetic Rate ◽  
Rate Laws ◽  
Reaction Processes ◽  
Kinetics Of

We describe Dizzy, a software tool for stochastically and deterministically modeling the spatially homogeneous kinetics of integrated large-scale genetic, metabolic, and signaling networks. Notable features include a modular simulation framework, reusable modeling elements, complex kinetic rate laws, multi-step reaction processes, steady-state noise estimation, and spatial compartmentalization.

Stability and bifurcation of delay-coupled genetic regulatory networks with hub structure

2019 ◽  
Vol 356 (5) ◽  
pp. 2847-2869 ◽  
Author(s):  
Dandan Yue ◽  
Zhi-Hong Guan ◽  
Juan Li ◽  
Feng Liu ◽  
Jiang-Wen Xiao ◽  
...  
Keyword(s):  
Regulatory Networks ◽  
Genetic Regulatory Networks ◽  
Stability And Bifurcation
Sign in / Sign up

Export Citation Format

Share Document