A Competition Assay for DNA Binding Using the Fluorescent Probe ANS

Author(s):  
Ian A. Taylor ◽  
G. Geoff Kneale
RSC Advances ◽  
2014 ◽  
Vol 4 (108) ◽  
pp. 63549-63558 ◽  
Author(s):  
Saptarshi Ghosh ◽  
Pronab Kundu ◽  
Bijan Kumar Paul ◽  
Nitin Chattopadhyay

Binding mode of biologically relevant anionic probe, ANS, with ctDNA is divulged from spectroscopic and molecular docking studies.


2021 ◽  
pp. 109707
Author(s):  
Quan-Qi Yu ◽  
Xue-Xian Lang ◽  
Juan-Juan Gao ◽  
Hong-Yao Li ◽  
Yi-Tong Bai ◽  
...  
Keyword(s):  

1988 ◽  
Vol 8 (4) ◽  
pp. 1809-1811 ◽  
Author(s):  
P Ghazal ◽  
H Lubon ◽  
L Hennighausen

The possibility of DNA-binding proteins interacting in vitro with the polymerase II transcriptional machinery was explored by using a competition assay with individual target sequences for enhancer-binding factors. Transcription factors binding to at least five specific enhancer sequences mediate the activity of the human cytomegalovirus immediate-early 1 gene in vitro. Furthermore, our data suggest that individual DNA-bound enhancer factors can interact with the promoter transcription complex.


PLoS ONE ◽  
2014 ◽  
Vol 9 (1) ◽  
pp. e86143 ◽  
Author(s):  
Tsung-Lin Yang ◽  
Lin Lin ◽  
Pei-Jen Lou ◽  
Ta-Chau Chang ◽  
Tai-Horng Young

1981 ◽  
Vol 52 (1) ◽  
pp. 271-287
Author(s):  
T. Toda ◽  
M. Yamamoto ◽  
M. Yanagida

Video-connected fluorescence microscopy was introduced to study the yeast nuclear chromatin region. It was defined as the nuclear area where a DNA-binding fluorescent probe 4′,6-diamidino-2-phenylindole specifically bound and fluoresced. The 3-dimensional feature of the mitotic chromatin region was deduced by analysing the successive video images of a cell viewed at different angles. By investigating synchronous culture of the wild-type fission yeast Schizosaccharomyces pombe, we found sequential structural alterations in the chromatin region during mitosis. The steps found include the compaction of the chromatin region from the regular hemispherical form, the formation of a U-shaped intermediate and the rapid segregation into 2 daughter hemispherical forms. Six cs cdc mutants, apparently blocked in mitosis, were observed by fluorescence microscopy. Under the restrictive conditions their chromatin regions exhibited either hemispherical, compact, disk-like, U-shaped or partially segregated chromatin regions. Two mutants showed anomalous nuclear locations. The results of the temperature shift-up experiments of the highly reversible KM52 and KM108 strains supported the above scheme of sequential alterations in the chromatin region.


PLoS ONE ◽  
2020 ◽  
Vol 15 (9) ◽  
pp. e0239145
Author(s):  
Sudakshina Ganguly ◽  
Debasis Ghosh ◽  
Nagarjun Narayanaswamy ◽  
T. Govindaraju ◽  
Gautam Basu

1988 ◽  
Vol 8 (4) ◽  
pp. 1809-1811
Author(s):  
P Ghazal ◽  
H Lubon ◽  
L Hennighausen

The possibility of DNA-binding proteins interacting in vitro with the polymerase II transcriptional machinery was explored by using a competition assay with individual target sequences for enhancer-binding factors. Transcription factors binding to at least five specific enhancer sequences mediate the activity of the human cytomegalovirus immediate-early 1 gene in vitro. Furthermore, our data suggest that individual DNA-bound enhancer factors can interact with the promoter transcription complex.


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