Systems Biology: Generating and Understanding Big Data

Author(s):  
Stephanie S. Kim ◽  
Timothy R. Donahue
Keyword(s):  
Big Data ◽  
Author(s):  
Terezinha M. Souza ◽  
Jos C. S. Kleinjans ◽  
Danyel G. J. Jennen
Keyword(s):  
Big Data ◽  

Web Services ◽  
2019 ◽  
pp. 2230-2254
Author(s):  
Amandeep Kaur Kahlon ◽  
Ashok Sharma

The major concern in this chapter is to understand the need of system biology in prediction models in studying tuberculosis infection in the big data era. The overall complexity of biological phenomenon, such as biochemical, biophysical, and other molecular processes, within pathogen as well as their interaction with host is studied through system biology approaches. First, consideration is given to the necessity of prediction models integrating system biology approaches and later on for their replacement and refinement using high throughput data. Various ongoing projects, consortium, databases, and research groups involved in tuberculosis eradication are also discussed. This chapter provides a brief account of TB predictive models and their importance in system biology to study tuberculosis and host-pathogen interactions. This chapter also addresses big data resources and applications, data management, limitations, challenges, solutions, and future directions.


2015 ◽  
Vol 7 (1) ◽  
Author(s):  
Christoph J. Blohmke ◽  
Daniel O’Connor ◽  
Andrew J. Pollard

2014 ◽  
Vol 35 (9) ◽  
pp. 450-460 ◽  
Author(s):  
Avi Ma’ayan ◽  
Andrew D. Rouillard ◽  
Neil R. Clark ◽  
Zichen Wang ◽  
Qiaonan Duan ◽  
...  

2014 ◽  
Vol 2014 ◽  
pp. 1-11 ◽  
Author(s):  
Md. Altaf-Ul-Amin ◽  
Farit Mochamad Afendi ◽  
Samuel Kuria Kiboi ◽  
Shigehiko Kanaya

Science is going through two rapidly changing phenomena: one is the increasing capabilities of the computers and software tools from terabytes to petabytes and beyond, and the other is the advancement in high-throughput molecular biology producing piles of data related to genomes, transcriptomes, proteomes, metabolomes, interactomes, and so on. Biology has become a data intensive science and as a consequence biology and computer science have become complementary to each other bridged by other branches of science such as statistics, mathematics, physics, and chemistry. The combination of versatile knowledge has caused the advent of big-data biology, network biology, and other new branches of biology. Network biology for instance facilitates the system-level understanding of the cell or cellular components and subprocesses. It is often also referred to as systems biology. The purpose of this field is to understand organisms or cells as a whole at various levels of functions and mechanisms. Systems biology is now facing the challenges of analyzing big molecular biological data and huge biological networks. This review gives an overview of the progress in big-data biology, and data handling and also introduces some applications of networks and multivariate analysis in systems biology.


2013 ◽  
Vol 7 (Suppl 2) ◽  
pp. S1 ◽  
Author(s):  
Yong Wang ◽  
Xiang-Sun Zhang ◽  
Luonan Chen

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