Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq.).

2005 ◽  
Vol 110 (4) ◽  
pp. 754-765 ◽  
Author(s):  
N. Billotte ◽  
N. Marseillac ◽  
A.-M. Risterucci ◽  
B. Adon ◽  
P. Brottier ◽  
...  

2013 ◽  
Vol 33 (2) ◽  
pp. 415-424 ◽  
Author(s):  
Kittipat Ukoskit ◽  
Vipavee Chanroj ◽  
Ganlayarat Bhusudsawang ◽  
Kwanjai Pipatchartlearnwong ◽  
Sithichoke Tangphatsornruang ◽  
...  


Genome ◽  
1997 ◽  
Vol 40 (1) ◽  
pp. 116-122 ◽  
Author(s):  
S. Mayes ◽  
P. L. Jack ◽  
R. H. V. Corley ◽  
D. F. Marshall

We have developed a restriction fragment length polymorphism (RFLP) genetic map in oil palm (Elaeis guineensis Jacq.) for use in breeding programmes. A segregating population of 98 individuals was probed with 84 informative low copy clones (mainly PstI genomics). This yielded 103 scorable loci, of which 97 could be linked into 24 groups of two or more markers (n = 16 for oil palm), encompassing a total of 860 cM. The high level of linkage between markers (95%) suggests good genome coverage and very little segregation distortion of markers was observed. The mapping population, which was generated by the selfing of an important breeding palm (A 137/30), also segregated for the shell thickness character (Sh), enabling mapping of the gene conferring this major commercial trait. The nearest RFLP marker (pOPgSP1282) was located 9.8 cM from Sh in the mapping population and 6.6 cM away in a related (A137/30 × E80/29) smaller population (45 palms). Strategies for conversion of RFLP markers to a PCR format were explored and two important markers were shown to generate allelic variants following PCR amplification and restriction digestion of PCR products. The application of this map to oil palm breeding programmes is discussed.Key words: oil palm, Elaeis guineensis Jacq., RFLP, linkage map, shell thickness.



2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Javier Herrero ◽  
Baitha Santika ◽  
Ana Herrán ◽  
Pratiwi Erika ◽  
Upit Sarimana ◽  
...  


Plant Omics ◽  
2017 ◽  
Vol 10 (05) ◽  
pp. 247-251 ◽  
Author(s):  
Yurnaliza ◽  
◽  
Rizkita Rachmi Esyanti ◽  
Agus Susanto ◽  
I Nyoman Pugeg Aryantha ◽  
...  


2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Molla F. Mengist ◽  
Hamed Bostan ◽  
Elisheba Young ◽  
Kristine L. Kay ◽  
Nicholas Gillitt ◽  
...  

AbstractFruit quality traits play a significant role in consumer preferences and consumption in blueberry (Vaccinium corymbosum L). The objectives of this study were to construct a high-density linkage map and to identify the underlying genetic basis of fruit quality traits in blueberry. A total of 287 F1 individuals derived from a cross between two southern highbush blueberry cultivars, ‘Reveille’ and ‘Arlen’, were phenotyped over three years (2016–2018) for fruit quality-related traits, including titratable acidity, pH, total soluble solids, and fruit weight. A high-density linkage map was constructed using 17k single nucleotide polymorphisms markers. The linkage map spanned a total of 1397 cM with an average inter-loci distance of 0.08 cM. The quantitative trait loci interval mapping based on the hidden Markov model identified 18 loci for fruit quality traits, including seven loci for fruit weight, three loci for titratable acidity, five loci for pH, and three loci for total soluble solids. Ten of these loci were detected in more than one year. These loci explained phenotypic variance ranging from 7 to 28% for titratable acidity and total soluble solid, and 8–13% for pH. However, the loci identified for fruit weight did not explain more than 10% of the phenotypic variance. We also reported the association between fruit quality traits and metabolites detected by Proton nuclear magnetic resonance analysis directly responsible for these fruit quality traits. Organic acids, citric acid, and quinic acid were significantly (P < 0.05) and positively correlated with titratable acidity. Sugar molecules showed a strong and positive correlation with total soluble solids. Overall, the study dissected the genetic basis of fruit quality traits and established an association between these fruit quality traits and metabolites.



Bragantia ◽  
2018 ◽  
Vol 77 (4) ◽  
pp. 546-556
Author(s):  
Christian Camilo Castañeda Cardona ◽  
Yacenia Morillo Coronado ◽  
Ana Cruz Morillo Conronado ◽  
Iván Ochoa


2013 ◽  
Vol 31 (4) ◽  
pp. 909-920 ◽  
Author(s):  
Toru Sugita ◽  
Yukari Semi ◽  
Hiromasa Sawada ◽  
Yumi Utoyama ◽  
Yuko Hosomi ◽  
...  


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