Potential energy surface and kinetics of the helix–coil transition in a 33-peptide

2007 ◽  
Vol 118 (1) ◽  
pp. 25-34 ◽  
Author(s):  
Giorgia Brancolini ◽  
Alessandro Venturini ◽  
Francesco Zerbetto
2021 ◽  
Vol 23 (10) ◽  
pp. 6141-6153
Author(s):  
Jianwei Cao ◽  
Yanan Wu ◽  
Haitao Ma ◽  
Zhitao Shen ◽  
Wensheng Bian

Quantum dynamics and ring polymer molecular dynamics calculations reveal interesting dynamical and kinetic behaviors of an endothermic complex-forming reaction.


2020 ◽  
Vol 22 (45) ◽  
pp. 26330-26339
Author(s):  
Xiaoxiao Lu ◽  
Bina Fu ◽  
Dong H. Zhang

The reaction dynamics and kinetics of OH + HO2 → H2O + O2 on the singlet state were revealed by theory, based on an accurate full-dimensional PES.


2020 ◽  
Vol 98 (8) ◽  
pp. 395-402
Author(s):  
Yunju Zhang ◽  
Bing He ◽  
Yuxi Sun

The potential energy surface for the CH2CCl + O2 reaction has been investigated by using the CCSD(T)/cc-pVTZ//B3LYP/6-311++G(d,p) method. Two type reaction mechanisms have been located. The H-abstraction of CH2CCl by O2 generates CHCCl + HO2 surmounting a 20.86 kcal/mol barrier. The addition between O2 and CH2CCl proceeds to an intermediate CH2CClO2 (IM1t and IM1c) without a barrier, which can further dissociate or isomerize to various products with the complicated processes. The temperature and pressure dependence rate constants for the CH2CCl + O2 reaction were computed by means of multi-channel RRKM-TST theory. Moreover, TDDFT calculations imply that IM1t, IM1c, IM2, IM4, IM5t, and IM5c will photolyze under the sunlight.


1991 ◽  
Vol 95 (18) ◽  
pp. 6784-6792 ◽  
Author(s):  
Carlos Gonzalez ◽  
John Theisen ◽  
Ling Zhu ◽  
H. Bernhard Schlegel ◽  
William L. Hase ◽  
...  

2019 ◽  
Vol 21 (37) ◽  
pp. 21162-21165 ◽  
Author(s):  
Tam V.-T. Mai ◽  
Lam K. Huynh

This communication resolves the disagreement in the chemical kinetics of the imidazole + OH reaction using a more rigorous master equation/Rice–Ramsperger–Kassel–Marcus rate model on a more comprehensive potential energy surface.


1992 ◽  
Vol 96 (4) ◽  
pp. 1767-1774 ◽  
Author(s):  
Carlos Gonzalez ◽  
John Theisen ◽  
H. Bernhard Schlegel ◽  
William L. Hase ◽  
E. W. Kaiser

2020 ◽  
Vol 22 (41) ◽  
pp. 23657-23664
Author(s):  
Yang Liu ◽  
Hongwei Song ◽  
Jun Li

The kinetics of the title reaction is studied by running the ring polymer molecular dynamics and quantum dynamics on an accurate potential energy surface.


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