TargetFreeze: Identifying Antifreeze Proteins via a Combination of Weights using Sequence Evolutionary Information and Pseudo Amino Acid Composition

The Journal of Membrane Biology ◽

10.1007/s00232-015-9811-z ◽

2015 ◽

Vol 248 (6) ◽

pp. 1005-1014 ◽

Author(s):

Xue He ◽

Ke Han ◽

Jun Hu ◽

Hui Yan ◽

Jing-Yu Yang ◽

...

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Antifreeze Proteins ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition

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Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2011.117 ◽

2012 ◽

Vol 9 (2) ◽

pp. 467-475 ◽

Author(s):

Loris Nanni ◽

Alessandra Lumini ◽

Dinesh Gupta ◽

Aarti Garg

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition

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Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2013.06.003 ◽

2013 ◽

Vol 334 ◽

pp. 45-51 ◽

Author(s):

Guo-Liang Fan ◽

Qian-Zhong Li

Keyword(s):

Chemical Shift ◽

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition

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Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.2014.968624 ◽

2014 ◽

Vol 33 (8) ◽

pp. 1720-1730 ◽

Author(s):

Ruifeng Xu ◽

Jiyun Zhou ◽

Bin Liu ◽

Yulan He ◽

Quan Zou ◽

...

Keyword(s):

Dna Binding ◽

Amino Acid Composition ◽

Acid Composition ◽

Binding Proteins ◽

Dna Binding Proteins ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition ◽

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Using the concept of Chou’s pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies

Amino Acids ◽

10.1007/s00726-007-0010-9 ◽

2007 ◽

Vol 34 (4) ◽

pp. 565-572 ◽

Author(s):

Shao-Wu Zhang ◽

Yun-Long Zhang ◽

Hui-Fang Yang ◽

Chun-Hui Zhao ◽

Quan Pan

Keyword(s):

Subcellular Localization ◽

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Protein Subcellular Localization ◽

Pseudo Amino Acid Composition ◽

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Predict protein structural class by incorporating two different modes of evolutionary information into Chou's general pseudo amino acid composition

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2017.10.003 ◽

2017 ◽

Vol 78 ◽

pp. 110-117 ◽

Author(s):

Yunyun Liang ◽

Shengli Zhang

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Evolutionary Information ◽

Pseudo Amino Acid Composition ◽

Structural Class ◽

Protein Structural Class

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Pseudo Amino Acid Composition and its Applications in Bioinformatics, Proteomics and System Biology

Current Proteomics ◽

10.2174/157016409789973707 ◽

2009 ◽

Vol 6 (4) ◽

pp. 262-274 ◽

Author(s):

Kuo-Chen Chou

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

System Biology ◽

Pseudo Amino Acid Composition

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OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2011.06.014 ◽

2011 ◽

Vol 30 ◽

pp. 129-134 ◽

Author(s):

Jian-Ding Qiu ◽

Sheng-Bao Suo ◽

Xing-Yu Sun ◽

Shao-Ping Shi ◽

Ru-Ping Liang

Keyword(s):

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

Oligomeric Proteins

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Prediction of Aptamer-Target Interacting Pairs with Pseudo-Amino Acid Composition

PLoS ONE ◽

10.1371/journal.pone.0086729 ◽

2014 ◽

Vol 9 (1) ◽

pp. e86729 ◽

Author(s):

Bi-Qing Li ◽

Yu-Chao Zhang ◽

Guo-Hua Huang ◽

Wei-Ren Cui ◽

Ning Zhang ◽

...

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition

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Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition

Biochemical and Biophysical Research Communications ◽

10.1016/j.bbrc.2005.09.117 ◽

2005 ◽

Vol 337 (3) ◽

pp. 752-756 ◽

Author(s):

Hong-Bin Shen ◽

Kuo-Chen Chou

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition

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Using Chou’s Pseudo Amino Acid Composition for Protein Remote Homology Detection

Engineering ◽

10.4236/eng.2013.510b032 ◽

2013 ◽

Vol 05 (10) ◽

pp. 149-153 ◽

Author(s):

Bin Liu ◽

Xiaolong Wang

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Homology Detection ◽

Pseudo Amino Acid Composition ◽

Remote Homology ◽

Remote Homology Detection

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