OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2011.06.014 ◽

2011 ◽

Vol 30 ◽

pp. 129-134 ◽

Author(s):

Jian-Ding Qiu ◽

Sheng-Bao Suo ◽

Xing-Yu Sun ◽

Shao-Ping Shi ◽

Ru-Ping Liang

Keyword(s):

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

Oligomeric Proteins

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Identify submitochondria and subchloroplast locations with pseudo amino acid composition: Approach from the strategy of discrete wavelet transform feature extraction

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research ◽

10.1016/j.bbamcr.2011.01.011 ◽

2011 ◽

Vol 1813 (3) ◽

pp. 424-430 ◽

Author(s):

Shao-Ping Shi ◽

Jian-Ding Qiu ◽

Xing-Yu Sun ◽

Jian-Hua Huang ◽

Shu-Yun Huang ◽

...

Keyword(s):

Feature Extraction ◽

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition

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Using the Concept of Chous Pseudo Amino Acid Composition to Predict Enzyme Family Classes: An Approach with Support Vector Machine Based on Discrete Wavelet Transform

Protein and Peptide Letters ◽

10.2174/092986610791190372 ◽

2010 ◽

Vol 17 (6) ◽

pp. 715-722 ◽

Author(s):

Jian-Ding Qiu ◽

Jian-Hua Huang ◽

Shao-Ping Shi ◽

Ru-Ping Liang

Keyword(s):

Support Vector Machine ◽

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

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Prediction of G-protein-coupled receptor classes based on the concept of Chou’s pseudo amino acid composition: An approach from discrete wavelet transform

Analytical Biochemistry ◽

10.1016/j.ab.2009.04.009 ◽

2009 ◽

Vol 390 (1) ◽

pp. 68-73 ◽

Author(s):

Jian-Ding Qiu ◽

Jian-Hua Huang ◽

Ru-Ping Liang ◽

Xiao-Quan Lu

Keyword(s):

Wavelet Transform ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

G Protein ◽

Acid Composition ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

G Protein Coupled Receptor ◽

G Protein Coupled

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Prediction of protein structural classes by Chou’s pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis

Amino Acids ◽

10.1007/s00726-008-0170-2 ◽

2008 ◽

Vol 37 (2) ◽

pp. 415-425 ◽

Author(s):

Zhan-Chao Li ◽

Xi-Bin Zhou ◽

Zong Dai ◽

Xiao-Yong Zou

Keyword(s):

Principal Component Analysis ◽

Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Continuous Wavelet Transform ◽

Principal Component ◽

Continuous Wavelet ◽

Pseudo Amino Acid Composition ◽

Structural Classes

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PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

Analytical Biochemistry ◽

10.1016/j.ab.2007.10.012 ◽

2008 ◽

Vol 373 (2) ◽

pp. 386-388 ◽

Author(s):

Hong-Bin Shen ◽

Kuo-Chen Chou

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition

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Predicting homo-oligomers and hetero-oligomers by pseudo-amino acid composition: An approach from discrete wavelet transformation

Biochimie ◽

10.1016/j.biochi.2011.03.010 ◽

2011 ◽

Vol 93 (7) ◽

pp. 1132-1138 ◽

Author(s):

Jian-Ding Qiu ◽

Xing-Yu Sun ◽

Sheng-Bao Suo ◽

Shao-Ping Shi ◽

Shu-Yun Huang ◽

...

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Wavelet Transformation ◽

Discrete Wavelet ◽

Discrete Wavelet Transformation ◽

Pseudo Amino Acid Composition

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Pseudo Amino Acid Composition and its Applications in Bioinformatics, Proteomics and System Biology

Current Proteomics ◽

10.2174/157016409789973707 ◽

2009 ◽

Vol 6 (4) ◽

pp. 262-274 ◽

Author(s):

Kuo-Chen Chou

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

System Biology ◽

Pseudo Amino Acid Composition

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Prediction of Aptamer-Target Interacting Pairs with Pseudo-Amino Acid Composition

PLoS ONE ◽

10.1371/journal.pone.0086729 ◽

2014 ◽

Vol 9 (1) ◽

pp. e86729 ◽

Author(s):

Bi-Qing Li ◽

Yu-Chao Zhang ◽

Guo-Hua Huang ◽

Wei-Ren Cui ◽

Ning Zhang ◽

...

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition

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Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition

Biochemical and Biophysical Research Communications ◽

10.1016/j.bbrc.2005.09.117 ◽

2005 ◽

Vol 337 (3) ◽

pp. 752-756 ◽

Author(s):

Hong-Bin Shen ◽

Kuo-Chen Chou

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition

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Using Chou’s Pseudo Amino Acid Composition for Protein Remote Homology Detection

Engineering ◽

10.4236/eng.2013.510b032 ◽

2013 ◽

Vol 05 (10) ◽

pp. 149-153 ◽

Author(s):

Bin Liu ◽

Xiaolong Wang

Keyword(s):

Amino Acid Composition ◽

Acid Composition ◽

Homology Detection ◽

Pseudo Amino Acid Composition ◽

Remote Homology ◽

Remote Homology Detection

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