Fine-mapping and candidate gene analysis of the Brassica juncea white-flowered mutant Bjpc2 using the whole-genome resequencing

2017 ◽  
Vol 293 (2) ◽  
pp. 359-370 ◽  
Author(s):  
Xiangxiang Zhang ◽  
Rihui Li ◽  
Li Chen ◽  
Sailun Niu ◽  
Lei Chen ◽  
...  
Keyword(s):  
Candidate Gene ◽  
Brassica Juncea ◽  
Fine Mapping ◽  
Gene Analysis ◽  
Whole Genome ◽  
Genome Resequencing ◽  
Candidate Gene Analysis ◽  
Whole Genome Resequencing

scholarly journals High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut

2018 ◽  
Vol 16 (11) ◽  
pp. 1954-1967 ◽  
Author(s):  
Gaurav Agarwal ◽  
Josh Clevenger ◽  
Manish K. Pandey ◽  
Hui Wang ◽  
Yaduru Shasidhar ◽  
...  
Keyword(s):  
Disease Resistance ◽  
Candidate Gene ◽  
Genetic Map ◽  
Fine Mapping ◽  
Gene Discovery ◽  
High Density ◽  
Whole Genome ◽  
Genome Resequencing ◽  
Whole Genome Resequencing

Characterization, fine mapping and candidate gene analysis of novel, dominant, nuclear male-sterile gene Ms53 in maize

Euphytica ◽  
2018 ◽  
Vol 214 (3) ◽  
Author(s):  
Chaoxian Liu ◽  
Guoqiang Wang ◽  
Jie Gao ◽  
Chunyan Li ◽  
Ziru Zhang ◽  
...  
Keyword(s):  
Candidate Gene ◽  
Fine Mapping ◽  
Gene Analysis ◽  
Male Sterile ◽  
Candidate Gene Analysis

Fine mapping and candidate gene analysis of a QTL associated with leaf rolling index on chromosome 4 of maize (Zea mays L.)

2019 ◽  
Vol 132 (11) ◽  
pp. 3047-3062 ◽  
Author(s):  
Lulu Gao ◽  
Guanghui Yang ◽  
Yufeng Li ◽  
Nannan Fan ◽  
Hongjian Li ◽  
...  
Keyword(s):  
Zea Mays ◽  
Candidate Gene ◽  
Fine Mapping ◽  
Zea Mays L ◽  
Gene Analysis ◽  
Chromosome 4 ◽  
Leaf Rolling ◽  
Candidate Gene Analysis

Genetic fine mapping and candidate gene analysis of the Gossypium hirsutum Ligon lintless-1 (Li1) mutant on chromosome 22(D)

2015 ◽  
Vol 290 (6) ◽  
pp. 2199-2211 ◽  
Author(s):  
Yurong Jiang ◽  
Mingquan Ding ◽  
Yuefen Cao ◽  
Fen Yang ◽  
Hua Zhang ◽  
...  
Keyword(s):  
Gossypium Hirsutum ◽  
Candidate Gene ◽  
Fine Mapping ◽  
Gene Analysis ◽  
Chromosome 22 ◽  
Candidate Gene Analysis

scholarly journals Molecular dissection of resistance gene cluster and candidate gene identification of Pl17 and Pl19 in sunflower by whole-genome resequencing

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Guojia Ma ◽  
Qijian Song ◽  
William R. Underwood ◽  
Zhiwei Zhang ◽  
Jason D. Fiedler ◽  
...  
Keyword(s):  
Candidate Gene ◽  
Gene Cluster ◽  
Resistance Gene ◽  
Snp Markers ◽  
Reference Sequence ◽  
Whole Genome ◽  
Genome Resequencing ◽  
Density Mapping ◽  
Family Protein ◽  
Whole Genome Resequencing

Abstract Sunflower (Helianthus annuus L.) production is challenged by different biotic and abiotic stresses, among which downy mildew (DM) is a severe biotic stress that is detrimental to sunflower yield and quality in many sunflower-growing regions worldwide. Resistance against its infestation in sunflower is commonly regulated by single dominant genes. Pl17 and Pl19 are two broad-spectrum DM resistance genes that have been previously mapped to a gene cluster spanning a 3.2 Mb region at the upper end of sunflower chromosome 4. Using a whole-genome resequencing approach combined with a reference sequence-based chromosome walking strategy and high-density mapping populations, we narrowed down Pl17 to a 15-kb region flanked by SNP markers C4_5711524 and SPB0001. A prospective candidate gene HanXRQChr04g0095641 for Pl17 was identified, encoding a typical TNL resistance gene protein. Pl19 was delimited to a 35-kb region and was approximately 1 Mb away from Pl17, flanked by SNP markers C4_6676629 and C4_6711381. The only gene present within the delineated Pl19 locus in the reference genome, HanXRQChr04g0095951, was predicted to encode an RNA methyltransferase family protein. Six and eight SNP markers diagnostic for Pl17 and Pl19, respectively, were identified upon evaluation of 96 diverse sunflower lines, providing a very useful tool for marker-assisted selection in sunflower breeding programs.

scholarly journals Fine mapping and candidate gene analysis of the white flower gene Brwf in Chinese cabbage (Brassica rapa L.)

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Ning Zhang ◽  
Lin Chen ◽  
Shuai Ma ◽  
Ruofan Wang ◽  
Qiong He ◽  
...  
Keyword(s):  
Candidate Gene ◽  
Brassica Rapa ◽  
Chinese Cabbage ◽  
Fine Mapping ◽  
White Flower ◽  
Gene Analysis ◽  
Candidate Gene Analysis

Fine mapping and candidate gene analysis of the nuclear restorer gene Rfp for pol CMS in rapeseed (Brassica napus L.)

2012 ◽  
Vol 125 (4) ◽  
pp. 773-779 ◽  
Author(s):  
Zhi Liu ◽  
Pingwu Liu ◽  
Furong Long ◽  
Dengfeng Hong ◽  
Qingbiao He ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Candidate Gene ◽  
Fine Mapping ◽  
Gene Analysis ◽  
Restorer Gene ◽  
Brassica Napus L ◽  
Candidate Gene Analysis ◽  
Nuclear Restorer Gene

scholarly journals Fine Mapping and Candidate Gene Analysis of the Leaf-Color Gene ygl-1 in Maize

PLoS ONE ◽  
2016 ◽  
Vol 11 (4) ◽  
pp. e0153962 ◽  
Author(s):  
Haiying Guan ◽  
Xiangbo Xu ◽  
Chunmei He ◽  
Chunxiao Liu ◽  
Qiang Liu ◽  
...  
Keyword(s):  
Candidate Gene ◽  
Fine Mapping ◽  
Gene Analysis ◽  
Leaf Color ◽  
Candidate Gene Analysis ◽  
Color Gene
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