A dual-parameter identification approach for data-based predictive modeling of hybrid gene regulatory network-growth kinetics in Pseudomonas putida mt-2

Bioprocess and Biosystems Engineering ◽

10.1007/s00449-020-02360-2 ◽

2020 ◽

Vol 43 (9) ◽

pp. 1671-1688

Author(s):

Argyro Tsipa ◽

Jake Alan Pitt ◽

Julio R. Banga ◽

Athanasios Mantalaris

Keyword(s):

Parameter Identification ◽

Pseudomonas Putida ◽

Gene Regulatory Network ◽

Predictive Modeling ◽

Growth Kinetics ◽

Regulatory Network ◽

Hybrid Gene ◽

Network Growth ◽

Identification Approach ◽

Gene Regulatory

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Gene regulatory network growth by duplication

Nature Genetics ◽

10.1038/ng1340 ◽

2004 ◽

Vol 36 (5) ◽

pp. 492-496 ◽

Author(s):

Sarah A Teichmann ◽

M Madan Babu

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Network Growth ◽

Gene Regulatory

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Optimal bioprocess design through a gene regulatory network – Growth kinetic hybrid model: Towards replacing Monod kinetics

Metabolic Engineering ◽

10.1016/j.ymben.2018.04.023 ◽

2018 ◽

Vol 48 ◽

pp. 129-137 ◽

Author(s):

Argyro Tsipa ◽

Michalis Koutinas ◽

Chonlatep Usaku ◽

Athanasios Mantalaris

Keyword(s):

Gene Regulatory Network ◽

Hybrid Model ◽

Regulatory Network ◽

Growth Kinetic ◽

Monod Kinetics ◽

Network Growth ◽

Bioprocess Design ◽

Gene Regulatory

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Mass-Dispersed Gravitational Search Algorithm for Gene Regulatory Network Model Parameter Identification

Lecture Notes in Computer Science - Simulated Evolution and Learning ◽

10.1007/978-3-642-34859-4_7 ◽

2012 ◽

pp. 62-72 ◽

Author(s):

Mohsen Davarynejad ◽

Zary Forghany ◽

Jan van den Berg

Keyword(s):

Parameter Identification ◽

Gene Regulatory Network ◽

Network Model ◽

Regulatory Network ◽

Search Algorithm ◽

Gravitational Search Algorithm ◽

Model Parameter ◽

Gene Regulatory ◽

Gravitational Search ◽

Model Parameter Identification

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Faculty Opinions recommendation of A gene regulatory network for root epidermis cell differentiation in Arabidopsis.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.13923961.15380063 ◽

2012 ◽

Author(s):

Renze Heidstra

Keyword(s):

Cell Differentiation ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Root Epidermis ◽

Gene Regulatory ◽

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Faculty Opinions recommendation of A gene regulatory network controlling the embryonic specification of endoderm.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718560070.793514574 ◽

2016 ◽

Author(s):

David McClay

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Gene Regulatory

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Faculty Opinions recommendation of An Arabidopsis gene regulatory network for secondary cell wall synthesis.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.725287898.793503865 ◽

2015 ◽

Author(s):

Niko Geldner ◽

Tonni Andersen

Keyword(s):

Cell Wall ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Secondary Cell Wall ◽

Cell Wall Synthesis ◽

Arabidopsis Gene ◽

Gene Regulatory ◽

Secondary Cell Wall Synthesis

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Faculty Opinions recommendation of Odd-paired controls frequency doubling in Drosophila segmentation by altering the pair-rule gene regulatory network.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.726638482.793522390 ◽

2016 ◽

Author(s):

Siegfried Roth

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Frequency Doubling ◽

Pair Rule Gene ◽

Gene Regulatory ◽

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Faculty Opinions recommendation of Rare and common epilepsies converge on a shared gene regulatory network providing opportunities for novel antiepileptic drug discovery.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.727104531.793526454 ◽

2016 ◽

Author(s):

Sanjay Sisodiya

Keyword(s):

Drug Discovery ◽

Antiepileptic Drug ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Gene Regulatory ◽

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Faculty Opinions recommendation of Ground rules of the pluripotency gene regulatory network.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.727162803.793550339 ◽

2018 ◽

Author(s):

Jing-Dong Jackie Han

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Pluripotency Gene ◽

Gene Regulatory

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Faculty Opinions recommendation of Reiterative AP2a activity controls sequential steps in the neural crest gene regulatory network.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.7862958.8210057 ◽

2011 ◽

Author(s):

Igor B Dawid

Keyword(s):

Neural Crest ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Gene Regulatory

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