scholarly journals Theoretical characterization of the shikimate 5-dehydrogenase reaction from Mycobacterium tuberculosis by hybrid QC/MM simulations and quantum chemical descriptors

2020 ◽  
Vol 26 (11) ◽  
Author(s):  
Igor Barden Grillo ◽  
José Fernando Ruggiero Bachega ◽  
Luis Fernando S. M. Timmers ◽  
Rafael A. Caceres ◽  
Osmar Norberto de Souza ◽  
...  
2009 ◽  
Vol 1216 (12) ◽  
pp. 2540-2547 ◽  
Author(s):  
Eufrozina A. Hoffmann ◽  
Zoltan A. Fekete ◽  
Robert Rajkó ◽  
István Pálinkó ◽  
Tamás Körtvélyesi

1995 ◽  
Vol 338 (1-3) ◽  
pp. 293-301 ◽  
Author(s):  
K. Choho ◽  
W. Langenaeker ◽  
G. Van De Woude ◽  
P. Geerlings

2020 ◽  
Vol 2 (29(56)) ◽  
pp. 27-30
Author(s):  
E.N. Krylov ◽  
L.V. Virzum ◽  
I.D. Kryukova

The quantum parameters of aromatic sulfonylamides are determined to describe their interaction with carbonic anhydrase at the theory level M06/6-311 ++G**(SMD). The molecular electrostatic potential on the nitrogen atom in sulfamides and Hirschfeld charge on this atom have been found to appear to be adequate and determinative descriptors of carbonic anhydrase inhibition.


2008 ◽  
Vol 6 (2) ◽  
pp. 310-318 ◽  
Author(s):  
Gui-Ning Lu ◽  
Xue-Qin Tao ◽  
Zhi Dang ◽  
Xiao-Yun Yi ◽  
Chen Yang

AbstractQuantitative structure-property relationship (QSPR) modeling is a powerful approach for predicting environmental behavior of organic pollutants with their structure descriptors. This study reports an optimal QSPR model for estimating logarithmic n-octanol/water partition coefficients (log K OW) of polycyclic aromatic hydrocarbons (PAHs). Quantum chemical descriptors computed with density functional theory at B3LYP/6-31G(d) level and partial least squares (PLS) analysis with optimizing procedure were used for generating QSPR models for log K OW of PAHs. The squared correlation coefficient (R 2) of the optimal model was 0.990, and the results of crossvalidation test (Q 2cum=0.976) showed this optimal model had high fitting precision and good predictability. The log K OW values predicted by the optimal model are very close to those observed. The PLS analysis indicated that PAHs with larger electronic spatial extent and lower total energy values tend to be more hydrophobic and lipophilic.


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