Abstract. Mixed layer is the most variable and dynamically active part of the marine environment that couples the underlying ocean to the atmosphere and plays an important role in determining the chlorophyll concentration. In this paper we examined the seasonal variability of the mixed layer depth in the Bay of Bengal, the factors responsible for it and the coupling of mixed layer processes to the chlorophyll biomass using a suite of in situ as well as remote sensing data. The basin-wide mixed layer depth was the shallowest during spring intermonsoon, which was associated with strong themohaline stratification of the upper water column. The prevailing winds which were the weakest of all the seasons were unable to break the stratification leading to the observed shallow mixed layer. Consistent with the warm oligotrophic upper ocean, the surface chlorophyll concentrations were the least and the vertical profile of chlorophyll was characterized by a subsurface chlorophyll maximum. Similarly, during summer though the monsoon winds were the strongest they were unable to break the upper ocean haline-stratification in the northern Bay brought about by a combination of excess precipitation over evaporation and fresh water influx from rivers adjoining the Bay of Bengal. Consistent with this though the nitrate concentrations were high in the northern part of the Bay, the chlorophyll concentrations were low indicating the light limitation. In contrast, in the south, advection of high salinity waters from the Arabian Sea coupled with the westward propagating Rossby waves of annual periodicity were able to decrease stability of the upper water column and the prevailing monsoon winds were able to initiate deep mixing leading to the observed deep mixed layer. The high chlorophyll concentration observed in the south resulted from the positive wind stress curl which pumped nutrient rich subsurface waters to the euphotic zone. The southward extension of the shallow mixed layer in fall intermonsoon resulted from the advection of low salinity waters from the northern Bay combined with the secondary heating by the incoming short wave radiation. The satellite-derived chlorophyll pigment concentration during fall intermonsoon was similar to that of summer but with reduced values. The basin-wide deep mixed layer during winter resulted from a combination of reduced short wave radiation, increase in salinity and comparatively stronger winds. The mismatch between the low nitrate and comparatively higher chlorophyll biomass during winter indicated the efficacy of the limited nitrate data to adequately resolve the coupling between the mixed layer processes and the chlorophyll biomass.