QTL mapping of biomass and forage quality traits measured using near-infrared reflectance spectroscopy (NIRS) in switchgrass

Euphytica ◽  
2021 ◽  
Vol 217 (3) ◽  
Author(s):  
Rasyidah M. Razar ◽  
Shiva Makaju ◽  
Ali M. Missaoui
2021 ◽  
pp. 096703352110075
Author(s):  
Adou Emmanuel Ehounou ◽  
Denis Cornet ◽  
Lucienne Desfontaines ◽  
Carine Marie-Magdeleine ◽  
Erick Maledon ◽  
...  

Despite the importance of yam ( Dioscorea spp.) tuber quality traits, and more precisely texture attributes, high-throughput screening methods for varietal selection are still lacking. This study sets out to define the profile of good quality pounded yam and provide screening tools based on predictive models using near infrared reflectance spectroscopy. Seventy-four out of 216 studied samples proved to be moldable, i.e. suitable for pounded yam. While samples with low dry matter (<25%), high sugar (>4%) and high protein (>6%) contents, low hardness (<5 N), high springiness (>0.5) and high cohesiveness (>0.5) grouped mostly non-moldable genotypes, the opposite was not true. This outline definition of a desirable chemotype may allow breeders to choose screening thresholds to support their choice. Moreover, traditional near infrared reflectance spectroscopy quantitative prediction models provided good prediction for chemical aspects (R2 > 0.85 for dry matter, starch, protein and sugar content), but not for texture attributes (R2 < 0.58). Conversely, convolutional neural network classification models enabled good qualitative prediction for all texture parameters but hardness (i.e. an accuracy of 80, 95, 100 and 55%, respectively, for moldability, cohesiveness, springiness and hardness). This study demonstrated the usefulness of near infrared reflectance spectroscopy as a high-throughput way of phenotyping pounded yam quality. Altogether, these results allow for an efficient screening toolbox for quality traits in yams.


2004 ◽  
Vol 35 (5-6) ◽  
pp. 665-678 ◽  
Author(s):  
A. García Ciudad ◽  
B. Fernández Santos ◽  
B. R. Vázquez de Aldana ◽  
I. Zabalgogeazcoa ◽  
M. Y. Gutiérrez ◽  
...  

2020 ◽  
Vol 10 (17) ◽  
pp. 6035
Author(s):  
Emmanuel Oladeji Alamu ◽  
Michael Adesokan ◽  
Asrat Asfaw ◽  
Busie Maziya-Dixon

High throughput techniques for phenotyping quality traits in root and tuber crops are useful in breeding programs where thousands of genotypes are screened at the early stages. This study assessed the effects of sample preparation on the prediction accuracies of dry matter, protein, and starch content in fresh yam using Near-Infrared Reflectance Spectroscopy (NIRS). Fresh tubers of Dioscorearotundata (D. rotundata) and Dioscoreaalata (D. alata) were prepared using different sampling techniques—blending, chopping, and grating. Spectra of each sample and reference data were used to develop calibration models using Modified Partial Least Square (MPLS). The performance of the model developed from the blended yam samples was tested using a new set of yam samples (N = 50) by comparing their wet laboratory results with the predicted values from NIRS. Blended samples had the highest coefficient of prediction (R2pre) for dry matter (0.95) and starch (0.83), though very low for protein (0.26), while grated samples had the lowest R2pre of 0.87 for dry matter and 0.50 for starch. Results showed that blended samples gave a better prediction compared with other methods. The feasibility of NIRS for the prediction of dry matter and starch content in fresh yam was highlighted.


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