scholarly journals ATP Dependent Chromatin Remodeling Enzymes in Embryonic Stem Cells

2010 ◽  
Vol 6 (1) ◽  
pp. 62-73 ◽  
Author(s):  
Srinivas Vinod Saladi ◽  
Ivana L. de la Serna
2012 ◽  
Vol 126 (4) ◽  
pp. 999-1008 ◽  
Author(s):  
V. Kashyap ◽  
K. B. Laursen ◽  
F. Brenet ◽  
A. J. Viale ◽  
J. M. Scandura ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Hui Yao ◽  
Douglas F. Hannum ◽  
Yiwen Zhai ◽  
Sophie F. Hill ◽  
Ricardo D.’Oliveira Albanus ◽  
...  

Abstract CHARGE syndrome, a rare multiple congenital anomaly condition, is caused by haploinsufficiency of the chromatin remodeling protein gene CHD7 (Chromodomain helicase DNA binding protein 7). Brain abnormalities and intellectual disability are commonly observed in individuals with CHARGE, and neuronal differentiation is reduced in CHARGE patient-derived iPSCs and conditional knockout mouse brains. However, the mechanisms of CHD7 function in nervous system development are not well understood. In this study, we asked whether CHD7 promotes gene transcription in neural progenitor cells via changes in chromatin accessibility. We used Chd7 null embryonic stem cells (ESCs) derived from Chd7 mutant mouse blastocysts as a tool to investigate roles of CHD7 in neuronal and glial differentiation. Loss of Chd7 significantly reduced neuronal and glial differentiation. Sholl analysis showed that loss of Chd7 impaired neuronal complexity and neurite length in differentiated neurons. Genome-wide studies demonstrated that loss of Chd7 leads to modified chromatin accessibility (ATAC-seq) and differential nascent expression (Bru-Seq) of neural-specific genes. These results suggest that CHD7 acts preferentially to alter chromatin accessibility of key genes during the transition of NPCs to neurons to promote differentiation. Our results form a basis for understanding the cell stage-specific roles for CHD7-mediated chromatin remodeling during cell lineage acquisition.


Stem Cells ◽  
2008 ◽  
Vol 26 (5) ◽  
pp. 1155-1165 ◽  
Author(s):  
Zhijiang Yan ◽  
Zhong Wang ◽  
Lioudmila Sharova ◽  
Alexei A. Sharov ◽  
Chen Ling ◽  
...  

Cells ◽  
2020 ◽  
Vol 9 (5) ◽  
pp. 1190
Author(s):  
Young Jin Lee ◽  
Seung Han Son ◽  
Chang Su Lim ◽  
Min Young Kim ◽  
Si Woo Lee ◽  
...  

Chromatin remodeling, including histone modification, chromatin (un)folding, and nucleosome remodeling, is a significant transcriptional regulation mechanism. By these epigenetic modifications, transcription factors and their regulators are recruited to the promoters of target genes, and thus gene expression is controlled through either transcriptional activation or repression. The Mat1-mediated transcriptional repressor (MMTR)/DNA methyltransferase 1 (DNMT1)-associated protein (Dmap1) is a transcription corepressor involved in chromatin remodeling, cell cycle regulation, DNA double-strand break repair, and tumor suppression. The Tip60-p400 complex proteins, including MMTR/Dmap1, interact with the oncogene Myc in embryonic stem cells (ESCs). These proteins interplay with the stem cell-related proteome networks and regulate gene expressions. However, the detailed mechanisms of their functions are unknown. Here, we show that MMTR/Dmap1, along with other Tip60-p400 complex proteins, bind the promoters of differentiation commitment genes in mouse ESCs. Hence, MMTR/Dmap1 controls gene expression alterations during differentiation. Furthermore, we propose a novel mechanism of MMTR/Dmap1 function in early stage lineage commitment of mouse ESCs by crosstalk with the polycomb group (PcG) proteins. The complex controls histone mark bivalency and transcriptional poising of commitment genes. Taken together, our comprehensive findings will help better understand the MMTR/Dmap1-mediated transcriptional regulation in ESCs and other cell types.


PLoS Genetics ◽  
2008 ◽  
Vol 4 (10) ◽  
pp. e1000241 ◽  
Author(s):  
Joseph Landry ◽  
Alexei A. Sharov ◽  
Yulan Piao ◽  
Lioudmila V. Sharova ◽  
Hua Xiao ◽  
...  

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