New z-complementary/complementary sequence sets with non-power-of-two length and low PAPR

Author(s):  
Bingsheng Shen ◽  
Yang Yang ◽  
Pingzhi Fan ◽  
Zhengchun Zhou
Author(s):  
Fanxin ZENG ◽  
Xiaoping ZENG ◽  
Zhenyu ZHANG ◽  
Guixin XUAN

Genetics ◽  
2000 ◽  
Vol 154 (2) ◽  
pp. 533-542
Author(s):  
Marc Bichara ◽  
Isabelle Pinet ◽  
Sylvie Schumacher ◽  
Robert P P Fuchs

Abstract The high level of polymorphism of microsatellites has been used for a variety of purposes such as positional cloning of genes associated with diseases, forensic medicine, and phylogenetic studies. The discovery that microsatellites are associated with human diseases, not only as markers of risk but also directly in disease pathogenesis, has triggered a renewed interest in understanding the mechanism of their instability. In this work we have investigated the role of DNA replication, long patch mismatch repair, and transcription on the genetic instability of all possible combinations of dinucleotide repeats in Escherichia coli. We show that the (GpC) and (ApT) self-complementary sequence repeats are the most unstable and that the mode of replication plays an important role in their instability. We also found that long patch mismatch repair is involved in avoiding both short deletion and expansion events and also in instabilities resulting from the processing of bulges of 6 to 8 bp for the (GpT/ApC)- and (ApG/CpT)-containing repeats. For each dinucleotide sequence repeat, we propose models for instability that involve the possible participation of unusual secondary structures.


2019 ◽  
Vol 12 (3) ◽  
pp. 349-362
Author(s):  
Yajing Zhou ◽  
Zhengchun Zhou ◽  
Yang Yang ◽  
Yong Wang

Sensors ◽  
2018 ◽  
Vol 18 (11) ◽  
pp. 3684 ◽  
Author(s):  
Yesong Gu ◽  
Po-Yuan Tseng ◽  
Xiang Bi ◽  
Jason Yang

The general clinical procedure for viral DNA detection or gene mutation diagnosis following polymerase chain reaction (PCR) often involves gel electrophoresis and DNA sequencing, which is usually time-consuming. In this study, we have proposed a facile strategy to construct a DNA biosensor, in which the platinum electrode was modified with a dual-film of electrochemically synthesized poly(3,4-ethylenedioxythiophene) (PEDOT) resulting in immobilized gold nanoparticles, with the gold nanoparticles easily immobilized in a uniform distribution. The DNA probe labeled with a SH group was then assembled to the fabricated electrode and employed to capture the target DNA based on the complementary sequence. The hybridization efficiency was evaluated with differential pulse voltammetry (DPV) in the presence of daunorubicin hydrochloride. Our results demonstrated that the peak current in DPV exhibited a linear correlation the concentration of target DNA that was complementary to the probe DNA. Moreover, the electrode could be reused by heating denaturation and re-hybridization, which only brought slight signal decay. In addition, the addition of the oxidized form of nicotinamide adenine dinucleotide (NAD+) could dramatically enhance the sensitivity by more than 5.45-fold, and the limit-of-detection reached about 100 pM.


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