Mitochondrial DNA sequences suggest unexpected phylogenetic position of Corso-Sardinian grass snakes (Natrix cetti) and do not support their species status, with notes on phylogeography and subspecies delineation of grass snakes

2012 ◽  
Vol 12 (1) ◽  
pp. 71-80 ◽  
Author(s):  
Uwe Fritz ◽  
Claudia Corti ◽  
Martin Päckert
Keyword(s):  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Phylogenetic Position ◽  
Species Status

Phylogenetic position of Apis nuluensis of northern Borneo and phylogeography of A. cerana as inferred from mitochondrial DNA sequences

2001 ◽  
Vol 48 (1) ◽  
pp. 44-51 ◽  
Author(s):  
H. Tanaka ◽  
D.W. Roubik ◽  
M. Kato ◽  
F. Liew ◽  
G. Gunsalam
Keyword(s):  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Phylogenetic Position

scholarly journals Phylogenetic Position and Generic Placement of The Socorro Wren (Thryomanes Sissonii)

The Auk ◽  
2005 ◽  
Vol 122 (1) ◽  
pp. 50-56 ◽  
Author(s):  
Juan E. Martínez Gómez ◽  
Brian R. Barber ◽  
A. Townsend Peterson
Keyword(s):  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Species Complex ◽  
Taxonomic Classification ◽  
Phylogenetic Position ◽  
Base Pairs ◽  
House Wren ◽  
Taxonomic History ◽  
Socorro Island ◽  
Nd2 Gene

Abstract Since early in its taxonomic history, placement of the Socorro Wren (Thryomanes sissonii) has been an object of contention. Of particular interest is its current placement in the genus Thryomanes, which makes that genus ditypic and leads to an odd biogeographic scenario for the Socorro Wren's colonization of Socorro Island. We assessed its phylogenetic position by analyzing 516 base pairs of mitochondrial DNA sequences from the ND2 gene of this species and 14 additional wren taxa. Contrary to its present placement, the Socorro Wren is nested phylogenetically within the House Wren species complex, being placed as sister to the clade Troglodytes aedon + T. musculus. The current hypothesis (i.e. sister to Thryomanes bewickii) is strongly invalidated by our analysis. Our analyses indicate that the most appropriate taxonomic classification for the Socorro Wren is Troglodytes sissonii. Posición Filogenética y Ubicación Genérica de Thryomanes sissonii

Phylogenetic Position of Mammoth and Steller's Sea Cow Within Tethytheria Demonstrated by Mitochondrial DNA Sequences

1997 ◽  
Vol 44 (4) ◽  
pp. 406-413 ◽  
Author(s):  
Tomowo Ozawa ◽  
Seiji Hayashi ◽  
Victor M. Mikhelson
Keyword(s):  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Phylogenetic Position ◽  
Sea Cow

scholarly journals A new species of Caecilia (Gymnophiona, Caeciliidae) from the Magdalena valley region of Colombia

ZooKeys ◽  
2019 ◽  
Vol 884 ◽  
pp. 135-157 ◽  
Author(s):  
Andrés R. Acosta-Galvis ◽  
Mauricio Torres ◽  
Paola Pulido-Santacruz
Keyword(s):  
Mitochondrial Dna ◽  
New Species ◽  
Body Length ◽  
Dna Sequences ◽  
Phylogenetic Position ◽  
The Family ◽  
The Status ◽  
A New Species

A new species of the genus Caecilia (Caeciliidae) from the western foothills of the Serranía de los Yariguíes in Colombia is described. Caecilia pulchraserranasp. nov. is similar to C. degenerata and C. corpulenta but differs from these species in having fewer primary annular grooves and a shorter body length. With this new species, the currently recognized species in the genus are increased to 35. Mitochondrial DNA sequences, including newly sequenced terminals representing two additional, previously unanalyzed species, corroborate the phylogenetic position of the new species within Caecilia and the monophyly of the genus. This analysis also included newly sequenced terminals of Epicrionops aff. parkeri (Rhinatrematidae) and trans-Andean Microcaecilia nicefori (Siphonopidae). Evidence was found for the non-monophyly of the family Siphonopidae and the siphonopid genera Microcaecilia and Siphonops. The implications of these results for caecilian systematics are discussed and the status of the trans-Andean populations of Caecilia degenerata is commented upon.

The Complete Mitochondrial Genomes of two Flying Fishes, Cheilopogon pinnatibarbatus japonicus and Hirundichthys rondeletii

2020 ◽  
Author(s):  
Liyan Qu ◽  
Heng Zhang ◽  
Fengying Zhang ◽  
Wei Wang ◽  
Fenghua Tang ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Rrna Genes ◽  
Phylogenetic Position ◽  
Mitochondrial Genomes ◽  
Trna Genes ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Flying Fishes ◽  
Complete Mitochondrial Genomes

Background: Genome-scale approaches have played a significant role in the analysis of evolutionary relationships. Because of rich polymorphisms, high evolutionary rate and rare recombination, mitochondrial DNA sequences are commonly considered as effective markers for estimating population genetics, evolutionary and phylogenetic relationships. Flying fishes are important components of epipelagic ecosystems. Up to now, only few complete mitochondrial genomes of flying fishes have been reported. In the present study, the complete mitochondrial DNA sequences of the Cheilopogon pinnatibarbatus japonicus and Hirundichthys rondeletii had been determined. Methods: Based on the published mitogenome of Cheilopogon atrisignis (GenBank: KU360729), fifteen pairs of primers were designed by the software Primer Premier 5.0 to get the complete mitochondrial genomes of two flying fishes. According to the reported data, the phylogenetic position of two flying fishes were detected using the conserved 12 protein-coding genes. Result: The complete mitochondrial genomes of Cheilopogon pinnatibarbatus japonicus and Hirundichthys rondeletii are determined. They are 16532bp and 16525bp in length, respectively. And they both consists of 13 protein-coding genes, 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes and a control region. The OL regions are conserved in these two flying fishes and might have no function. From the tree topologies, we found C.p. japonicus and H. rondeletii clustered in a group. The findings of the study would contribute to the phylogenetic classification and the genetic conservation management of C.p. japonicus and H. rondeletii.

Mitochondrial DNA Sequences Do Not Support Species Status of the Ramsey Canyon Leopard Frog (Rana subaquavocalis)

2004 ◽  
Vol 38 (3) ◽  
pp. 313-319 ◽  
Author(s):  
Caren S. Goldberg ◽  
Kimberleigh J. Field ◽  
Michael J. Sredl
Keyword(s):  
Mitochondrial Dna ◽  
Dna Sequences ◽  
Leopard Frog ◽  
Species Status

A new genus and new species of freshwater Chaetonotidae (Gastrotricha: Chaetonotida) from Brazil with phylogenetic position inferred from nuclear and mitochondrial DNA sequences

2016 ◽  
Vol 15 (1) ◽  
pp. 49-62 ◽  
Author(s):  
André R. S. Garraffoni ◽  
Thiago Q. Araújo ◽  
Anete P. Lourenço ◽  
Loretta Guidi ◽  
Maria Balsamo
Keyword(s):  
Mitochondrial Dna ◽  
New Species ◽  
Dna Sequences ◽  
New Genus ◽  
Phylogenetic Position

Ixodes chilensis Kohls, 1956 (Acari: Ixodida: Ixodidae): re-description of the female, description of the nymph, and phylogenetic position inferred from mitochondrial DNA sequences of the 16S rRNA gene

2018 ◽  
Vol 95 (8-9) ◽  
pp. 959-967 ◽  
Author(s):  
Daniel González-Acuña ◽  
María N. Saracho-Bottero ◽  
Gonzalo Ossa ◽  
Alberto A. Guglielmone ◽  
Santiago Nava
Keyword(s):  
Mitochondrial Dna ◽  
16S Rrna ◽  
16S Rrna Gene ◽  
Dna Sequences ◽  
Phylogenetic Position ◽  
Rrna Gene ◽  
The 16S Rrna Gene

A preliminary analysis of phylogenetic relationships and biogeography of the dangerously venomous Carpet Vipers, Echis (Squamata, Serpentes, Viperidae) based on mitochondrial DNA sequences

2009 ◽  
Vol 30 (2) ◽  
pp. 273-282 ◽  
Author(s):  
Michael Robinson ◽  
Nicholas Arnold ◽  
Salvador Carranza
Keyword(s):  
Mitochondrial Dna ◽  
North Africa ◽  
Dna Sequences ◽  
Preliminary Analysis ◽  
Climatic Changes ◽  
Species Status ◽  
Separate Species ◽  
Late Pliocene ◽  
The North ◽  
Oman Mountains

AbstractPhylogenetic analysis of 1117 bp of mitochondrial DNA sequences (731 bp of cytochrome b and 386 bp of 16S rRNA) indicate that Echis consists of four main clades: E. ocellatus, and the E. coloratus, E. pyramidum, and E. carinatus groups. In the E. coloratus group, E. coloratus itself shows substantial genetic divergence from E. omanensis, corroborating their separate species status. In the E. pyramidum clade, E. pyramidum from Egypt and E. leucogaster from West Africa are genetically very similar, even though samples are separated by 4000 km. South Arabian populations of the E. pyramidum group are much better differentiated from these and two species may be present, animals from Dhofar, southern Oman probably being referable to E. khosatzkii. In the E. carinatus group, specimens of E. carinatus sochureki and E. multisquamatus are very similar in their DNA. The phylogeny indicates that the split between the main groups of Echis was followed by separation of African and Arabian members of the E. pyramidum group, and of E. coloratus and E. omanensis. The last disjunction probably took place at the lowlands that run southwest of the North Oman mountains, which are likely to have been intermittently covered by marine incursions; they also separate the E. pyramidum and E. carinatus groups and several sister taxa of other reptiles. The E. carinatus group may have spread quite recently from North Oman into its very extensive southwest Asian range, and there appears to have been similar expansion of E. pyramidum (including E. leucogaster) in North Africa. Both these events are likely to be associated with the marked climatic changes of the Pleistocene or late Pliocene. Similar dramatic expansions have also recently occurred in three snake species in Iberia.

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