scholarly journals Agent-Based Models for Collective Animal Movement: Proximity-Induced State Switching

2021 ◽  
Author(s):  
Andrew Hoegh ◽  
Frank T. van Manen ◽  
Mark Haroldson
Keyword(s):  
Animal Movement ◽  
Agent Based Models ◽  
Agent Based ◽  
State Switching

Hierarchical Nonlinear Spatio-temporal Agent-Based Models for Collective Animal Movement

2017 ◽  
Vol 22 (3) ◽  
pp. 294-312 ◽  
Author(s):  
Patrick L. McDermott ◽  
Christopher K. Wikle ◽  
Joshua Millspaugh
Keyword(s):  
Animal Movement ◽  
Agent Based Models ◽  
Agent Based ◽  
Spatio Temporal

scholarly journals Agent Based Models of Polymicrobial Biofilms and the Microbiome—A Review

2021 ◽  
Vol 9 (2) ◽  
pp. 417
Author(s):  
Sherli Koshy-Chenthittayil ◽  
Linda Archambault ◽  
Dhananjai Senthilkumar ◽  
Reinhard Laubenbacher ◽  
Pedro Mendes ◽  
...  
Keyword(s):  
Species Interactions ◽  
Computational Models ◽  
Human Microbiome ◽  
Agent Based Modeling ◽  
Autonomous Agent ◽  
Agent Based Models ◽  
Agent Based ◽  
Complex Interactions ◽  
Mucosal Surfaces ◽  
Living Organisms

The human microbiome has been a focus of intense study in recent years. Most of the living organisms comprising the microbiome exist in the form of biofilms on mucosal surfaces lining our digestive, respiratory, and genito-urinary tracts. While health-associated microbiota contribute to digestion, provide essential nutrients, and protect us from pathogens, disturbances due to illness or medical interventions contribute to infections, some that can be fatal. Myriad biological processes influence the make-up of the microbiota, for example: growth, division, death, and production of extracellular polymers (EPS), and metabolites. Inter-species interactions include competition, inhibition, and symbiosis. Computational models are becoming widely used to better understand these interactions. Agent-based modeling is a particularly useful computational approach to implement the various complex interactions in microbial communities when appropriately combined with an experimental approach. In these models, each cell is represented as an autonomous agent with its own set of rules, with different rules for each species. In this review, we will discuss innovations in agent-based modeling of biofilms and the microbiota in the past five years from the biological and mathematical perspectives and discuss how agent-based models can be further utilized to enhance our comprehension of the complex world of polymicrobial biofilms and the microbiome.

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