Internal and external force fields and normal vibrations of the water molecules in Ba(ClO3)2.H2O and K2C2O4.H2O

1979 ◽  
Vol 52 ◽  
pp. 95-105 ◽  
Author(s):  
A. Eriksson ◽  
M.A. Hussein ◽  
B. Berglund ◽  
J. Tegenfeldt ◽  
J. Lindgren
2014 ◽  
Vol 156 (6) ◽  
pp. 1111-1124 ◽  
Author(s):  
Jun Wang ◽  
Ji Zhou ◽  
Long-Jin Lv ◽  
Wei-Yuan Qiu ◽  
Fu-Yao Ren

1998 ◽  
Vol 208 (1) ◽  
pp. 226-240 ◽  
Author(s):  
Chun Yang ◽  
Tadeusz Dabros ◽  
Dongqing Li ◽  
Jan Czarnecki ◽  
Jacob H. Masliyah

1968 ◽  
Vol 23 (5) ◽  
pp. 708-715 ◽  
Author(s):  
V. Hohler ◽  
H. D. Lutz

The IR-spectrum of gypsum (CaSO4·2 H2O) in the frequency range from 10 000 to 1200 cm-1 has been investigated with polarized light at room temperature. Between 3700 and 1200 cm-1, the measurements confirm the data of HASS and SUTHERLAND and as well as those of SCHAAK derived from IR and reflection measurements. The IR-spectrum shows a great number of bands, most of which can be assigned to combination and fundamental vibrations in terms of normal vibrations of the water molecules and the sulfate ions. The influence of the lattice vibrations is briefly discussed. The existence of hydrogen bonds between the water molecules and the sulfate ions gives rise to combinations of fundamental vibrations of both complexes.


2010 ◽  
Author(s):  
Alexander Demidov ◽  
Paul M. Champion ◽  
P. M. Champion ◽  
L. D. Ziegler

2008 ◽  
Author(s):  
A. K. Tiwari ◽  
Vaibhav Jain ◽  
R. A. Singh ◽  
V. K. Vaidyan ◽  
V. S. Jayakumar

Author(s):  
Yingying Zhang ◽  
Kamran Haider ◽  
Divya Kaur ◽  
Van A. Ngo ◽  
Xiuhong Cai ◽  
...  

Water molecules play a key role in all biochemical processes. They help define the shape of proteins, and they are reactant or product in many reactions and are released as ligands are bound. They facilitate the transfer of protons through transmembrane proton channel, pump and transporter proteins. Continuum electrostatics (CE) force fields used by program Multiconformation CE (MCCE) capture electrostatic interactions in biomolecules with an implicit solvent, which captures the averaged solvent water equilibrium properties. Hybrid CE methods can use explicit water molecules within the protein surrounded by implicit solvent. These hybrid methods permit the study of explicit hydrogen bond networks within the protein and allow analysis of processes such as proton transfer reactions. Yet hybrid CE methods have not been rigorously tested. Here, we present an explicit treatment of water molecules in the Gramicidin A (gA) channel using MCCE and compare the resulting distributions of water molecules and key hydration features against those obtained with explicit solvent Molecular Dynamics (MD) simulations with the nonpolarizable CHARMM36 and polarizable Drude force fields. CHARMM36 leads to an aligned water wire in the channel characterized by a large absolute net water dipole moment; the MCCE and Drude analysis lead to a small net dipole moment as the water molecules change orientation within the channel. The correct orientation is not as yet known, so these calculations identify an open question.


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