Data-driven feature learning for myocardial registration and segmentation

Author(s):  
Ilkay Oksuz ◽  
Anirban Mukhopadhyay ◽  
Rohan Dharmakumar ◽  
Sotirios A. Tsaftaris
Keyword(s):  
2021 ◽  
pp. 1-15
Author(s):  
Wentao Luo ◽  
Pingfa Feng ◽  
Jianfu Zhang ◽  
Dingwen Yu ◽  
Zhijun Wu

As the service life of the assembly equipment are short, the tightening data it produces are very limited. Therefore, data-driven assembly quality diagnosis is still a challenge task in industries. Transfer learning can be used to address small data problems. However, transfer learning has strict requirements on the training dataset, which is hard to satisfy. To solve the above problem, an Improved Deep Convolution Generative Adversarial Transfer Learning Model (IDCGAN-TM) is proposed, which integrates three modules: The generative learning module automatically produces source datasets based on small target datasets by using the improved generative-adversarial theory. The feature learning module improves the feature extraction ability by building a lightweight deep learning model (DL). The transfer learning module consists of a pre-trained DL and a one fully connected layer to better perform the intelligent quality diagnosis on the training small sample data. A parallel computing method is adopted to obtain produced source data efficiently. Real assembly quality diagnosis cases are designed and discussed to validate the advance of the proposed model. In addition, the comparison experiments are designed to show that the proposed approach holds the better transfer diagnosis performance compared with the existing three state-of-art approaches.


Author(s):  
Anirban Mukhopadhyay ◽  
Ilkay Oksuz ◽  
Marco Bevilacqua ◽  
Rohan Dharmakumar ◽  
Sotirios A. Tsaftaris

2021 ◽  
Vol 17 (2) ◽  
pp. e1008630
Author(s):  
Philipp Mergenthaler ◽  
Santosh Hariharan ◽  
James M. Pemberton ◽  
Corey Lourenco ◽  
Linda Z. Penn ◽  
...  

Phenotypic profiling of large three-dimensional microscopy data sets has not been widely adopted due to the challenges posed by cell segmentation and feature selection. The computational demands of automated processing further limit analysis of hard-to-segment images such as of neurons and organoids. Here we describe a comprehensive shallow-learning framework for automated quantitative phenotyping of three-dimensional (3D) image data; using unsupervised data-driven voxel-based feature learning, which enables computationally facile classification, clustering and advanced data visualization. We demonstrate the analysis potential on complex 3D images by investigating the phenotypic alterations of: neurons in response to apoptosis-inducing treatments and morphogenesis for oncogene-expressing human mammary gland acinar organoids. Our novel implementation of image analysis algorithms called Phindr3D allowed rapid implementation of data-driven voxel-based feature learning into 3D high content analysis (HCA) operations and constitutes a major practical advance as the computed assignments represent the biology while preserving the heterogeneity of the underlying data. Phindr3D is provided as Matlab code and as a stand-alone program (https://github.com/DWALab/Phindr3D).


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