Off to a slow start: Analyzing lag phases and accelerating rates in steady-state enzyme kinetics

2020 ◽  
Vol 593 ◽  
pp. 113595
Author(s):  
Erika Zangelmi ◽  
Luca Ronda ◽  
Camilla Castagna ◽  
Barbara Campanini ◽  
Maria Veiga-da-Cunha ◽  
...  
2018 ◽  
pp. 161-189
Author(s):  
Dagmar Klostermeier ◽  
Markus G. Rudolph
Keyword(s):  

2019 ◽  
Vol 12 (01) ◽  
pp. 1950008
Author(s):  
Banghe Li ◽  
Bo Li ◽  
Yuefeng Shen

Michaelis–Menten equation is a basic equation of enzyme kinetics and gives acceptable approximations of real chemical reaction processes. Analyzing the derivation of this equation yields the fact that its good performance of approximating real reaction processes is due to Michaelis–Menten curve (8). This curve is derived from Quasi-Steady-State Assumption (QSSA), which has been proved always true and called Quasi-Steady-State Law by Banghe Li et al. [Quasi-steady state laws in enzyme kinetics, J. Phys. Chem. A 112(11) (2008) 2311–2321]. Here, we found a polynomial equation with total degree of four [Formula: see text] (14), which gives more accurate approximation of the reaction process in two aspects: during the quasi-steady-state of the reaction, Michaelis–Menten curve approximates the reaction well, while our equation [Formula: see text] gives better approximation; near the end of the reaction, our equation approaches the end of the reaction with a tangent line the same to that of the reaction process trajectory simulated by mass action, while Michaelis–Menten curve does not. In addition, our equation [Formula: see text] differs to Michaelis–Menten curve less than the order of [Formula: see text] as [Formula: see text] approaches [Formula: see text]. By considering the above merits of [Formula: see text], we suggest it as a replacement of Michaelis–Menten curve. Intuitively, this new equation is more complex and harder to understand. But, just because of its complexity, it provides more information about the rate constants than Michaelis–Menten curve does. Finally, we get a better replacement of the Michaelis–Menten equation by combing [Formula: see text] and the equation [Formula: see text].


1988 ◽  
Vol 34 (12) ◽  
pp. 2486-2489 ◽  
Author(s):  
F Keller ◽  
C Emde ◽  
A Schwarz

Abstract Enzyme kinetics are usually described by the Michaelis-Menten equation, where the time-dependent decrease of substrate (-dS/dt) is a hyperbolic function of maximal velocity (Vmax), Michaelis constant (Km), and amount of substrate (S). Because the Michaelis-Menten function in its most general meaning requires an assumption of steady-state, it is less curvilinear than true enzyme kinetics. A saturation-type exponential function is more curvilinear than the hyperbolic function and more closely approximates enzyme kinetics: -dS/dt = Vmax [1 - exp(-S/Km)]. The mathematical representation of enzyme kinetics can be further improved by introducing a deceleration term (Vdec), to make the assumption of a steady state unnecessary. For the action of chymotrypsin on N-acetyltyrosylethylester, the Michaelis-Menten equation yields the following: Vmax = 3.74 mumol/min and Km = 833 mumol. According to decelerated enzyme kinetics, the values Vmax = 4.80 mumol/min, Vdec = 0.0118 mumol/min, and the association constant (Ka) = 0.00111/mumol are more nearly accurate for this reaction (where 1/Ka = 901 mumol approximately Km).


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