Crystal structures of NAD+-linked isocitrate dehydrogenase from the green alga Ostreococcus tauri and its evolutionary relationship with eukaryotic NADP+-linked homologs

Author(s):  
Wanggang Tang ◽  
Minhao Wu ◽  
Na Qin ◽  
Li Liu ◽  
Rui Meng ◽  
...  
2004 ◽  
Vol 22 (3) ◽  
pp. 589-597 ◽  
Author(s):  
Steven Robbens ◽  
Basheer Khadaroo ◽  
Alain Camasses ◽  
Evelyne Derelle ◽  
Conchita Ferraz ◽  
...  

2009 ◽  
Vol 11 (9) ◽  
pp. 2168-2178 ◽  
Author(s):  
Björn Mamat ◽  
Annette Roth ◽  
Clemens Grimm ◽  
Ulrich Ermler ◽  
Christos Tziatzios ◽  
...  

2015 ◽  
Vol 29 (6) ◽  
pp. 2462-2472 ◽  
Author(s):  
Wang‐Gang Tang ◽  
Ping Song ◽  
Zheng‐Yu Cao ◽  
Peng Wang ◽  
Guo‐Ping Zhu

2010 ◽  
Vol 22 (11) ◽  
pp. 3816-3830 ◽  
Author(s):  
Noelia Foresi ◽  
Natalia Correa-Aragunde ◽  
Gustavo Parisi ◽  
Gonzalo Caló ◽  
Graciela Salerno ◽  
...  

2012 ◽  
Vol 367 (1602) ◽  
pp. 2656-2668 ◽  
Author(s):  
Jimin Zheng ◽  
Susan P. Yates ◽  
Zongchao Jia

The switch between the Krebs cycle and the glyoxylate bypass is controlled by isocitrate dehydrogenase kinase/phosphatase (AceK). AceK, a bifunctional enzyme, phosphorylates and dephosphorylates isocitrate dehydrogenase (IDH) with its unique active site that harbours both the kinase and ATP/ADP-dependent phosphatase activities. AceK was the first example of prokaryotic phosphorylation identified, and the recent characterization of the structures of AceK and its complex with its protein substrate, IDH, now offers a new understanding of both previous and future endeavours. AceK is structurally similar to the eukaryotic protein kinase superfamily, sharing many of the familiar catalytic and regulatory motifs, demonstrating a close evolutionary relationship. Although the active site is shared by both the kinase and phosphatase functions, the catalytic residues needed for phosphatase function are readily seen when compared with the DXDX(T/V) family of phosphatases, despite the fact that the phosphatase function of AceK is strictly ATP/ADP-dependent. Structural analysis has also allowed a detailed look at regulation and its stringent requirements for interacting with IDH.


BMC Genomics ◽  
2016 ◽  
Vol 17 (1) ◽  
Author(s):  
Gaëlle Lelandais ◽  
Ivo Scheiber ◽  
Javier Paz-Yepes ◽  
Jean-Claude Lozano ◽  
Hugo Botebol ◽  
...  

Cells ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 290
Author(s):  
Ulrich Kück ◽  
Olga Schmitt

In eukaryotes, RNA trans-splicing is a significant RNA modification process for the end-to-end ligation of exons from separately transcribed primary transcripts to generate mature mRNA. So far, three different categories of RNA trans-splicing have been found in organisms within a diverse range. Here, we review trans-splicing of discontinuous group II introns, which occurs in chloroplasts and mitochondria of lower eukaryotes and plants. We discuss the origin of intronic sequences and the evolutionary relationship between chloroplast ribonucleoprotein complexes and the nuclear spliceosome. Finally, we focus on the ribonucleoprotein supercomplex involved in trans-splicing of chloroplast group II introns from the green alga Chlamydomonas reinhardtii. This complex has been well characterized genetically and biochemically, resulting in a detailed picture of the chloroplast ribonucleoprotein supercomplex. This information contributes substantially to our understanding of the function of RNA-processing machineries and might provide a blueprint for other splicing complexes involved in trans- as well as cis-splicing of organellar intron RNAs.


2006 ◽  
Vol 62 (a1) ◽  
pp. s138-s138
Author(s):  
E. C. M. Juan ◽  
H. Kondo ◽  
M. T. Hossain ◽  
W. Adachi ◽  
T. Nakai ◽  
...  

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