scholarly journals Optimization of a binding fragment targeting the “enlarged methionine pocket” leads to potent Trypanosoma brucei methionyl-tRNA synthetase inhibitors

2017 ◽  
Vol 27 (12) ◽  
pp. 2702-2707 ◽  
Author(s):  
Wenlin Huang ◽  
Zhongsheng Zhang ◽  
Ranae M. Ranade ◽  
J. Robert Gillespie ◽  
Ximena Barros-Álvarez ◽  
...  
2014 ◽  
Vol 70 (a1) ◽  
pp. C708-C708
Author(s):  
Cho Yeow Koh ◽  
Jasmine Nguyen ◽  
Sayaka Shibata ◽  
Zhongsheng Zhang ◽  
Ranae Ranade ◽  
...  

Infection by the protozoan parasite Trypanosoma brucei causes human African trypanosomiasis, commonly known as sleeping sickness. The disease is fatal without treatment; yet, current therapeutic options for the disease are inadequate due to toxicity, difficulty in administration and emerging resistance. Therefore, methionyl-tRNA synthetase of T. brucei (TbMetRS) is targeted for the development of new antitrypanosomal drugs. We have recently completed a high-throughput screening campaign against TbMetRS using a 364,131 compounds library in The Scripps Research Institute Molecular Screening Center. Here we outline our strategy to integrate the power of crystal structures with high-throughput screening in a drug discovery project. We applied the rapid crystal soaking procedure to obtain structures of TbMetRS in complex with inhibitors reported earlier[1] to approximately 70 high-throughput screening hits. This resulted in more than 20 crystal structures of TbMetRS·hit complexes. These hits cover a large diversity of chemical structures with IC50 values between 200 nM and 10 µM. Based on the solved structures and existing knowledge drawn from other in-house inhibitors, the IC50 value of the most promising hit has been improved. Further development of the compounds into potent TbMetRS inhibitors with desirable pharmacokinetic properties is on-going and will continue to benefit from information derived from crystal structures.


2016 ◽  
Vol 21 (6) ◽  
pp. 653-653

Pedró-Rosa, L.; Buckner, F.; Ranade, R. M.; et al. Identification of Potent Inhibitors of the Trypanosoma brucei Methionyl-tRNA Synthetase via High-Throughput Orthogonal Screening. J Biomol Screen. 2015, 20, 122–130. (Original DOI: 10.1177/1087057114548832 )


2012 ◽  
Vol 55 (14) ◽  
pp. 6342-6351 ◽  
Author(s):  
Sayaka Shibata ◽  
J. Robert Gillespie ◽  
Ranae M. Ranade ◽  
Cho Yeow Koh ◽  
Jessica E. Kim ◽  
...  

2014 ◽  
Vol 20 (1) ◽  
pp. 122-130 ◽  
Author(s):  
Laura Pedró-Rosa ◽  
Frederick S. Buckner ◽  
Ranae M. Ranade ◽  
Christina Eberhart ◽  
Franck Madoux ◽  
...  

Improved therapies for the treatment of Trypanosoma brucei, the etiological agent of the neglected tropical disease human African trypanosomiasis, are urgently needed. We targeted T. brucei methionyl-tRNA synthetase (MetRS), an aminoacyl-tRNA synthase (aaRS), which is considered an important drug target due to its role in protein synthesis, cell survival, and its significant differences in structure from its mammalian ortholog. Previous work using RNA interference of MetRS demonstrated growth inhibition of T. brucei, further validating it as an attractive target. We report the development and implementation of two orthogonal high-throughput screening assays to identify inhibitors of T. brucei MetRS. First, a chemiluminescence assay was implemented in a 1536-well plate format and used to monitor adenosine triphosphate depletion during the aminoacylation reaction. Hit confirmation then used a counterscreen in which adenosine monophosphate production was assessed using fluorescence polarization technology. In addition, a miniaturized cell viability assay was used to triage cytotoxic compounds. Finally, lower throughput assays involving whole parasite growth inhibition of both human and parasite MetRS were used to analyze compound selectivity and efficacy. The outcome of this high-throughput screening campaign has led to the discovery of 19 potent and selective T. brucei MetRS inhibitors.


2016 ◽  
Vol 124 ◽  
pp. 1081-1092 ◽  
Author(s):  
Wenlin Huang ◽  
Zhongsheng Zhang ◽  
Ximena Barros-Álvarez ◽  
Cho Yeow Koh ◽  
Ranae M. Ranade ◽  
...  

2020 ◽  
Vol 11 (8) ◽  
pp. 885-895
Author(s):  
Zhongsheng Zhang ◽  
Ximena Barros-Álvarez ◽  
J. Robert Gillespie ◽  
Ranae M. Ranade ◽  
Wenlin Huang ◽  
...  

Potent T. brucei methionyl-tRNA synthetase inhibitors built on two novel short and rigid linker systems.


2013 ◽  
Vol 57 (7) ◽  
pp. 3021-3028 ◽  
Author(s):  
Ranae M. Ranade ◽  
J. Robert Gillespie ◽  
Sayaka Shibata ◽  
Christophe L. M. J. Verlinde ◽  
Erkang Fan ◽  
...  

ABSTRACTNew classes of antiparasitic drugs active againstTrypanosoma bruceiare needed to combat human African trypanosomiasis. Inhibitors of methionyl-tRNA synthetase (MetRS) have excellent potential to be developed for this purpose (S. Shibata, J. R. Gillespie, A. M. Kelley, A. J. Napuli, Z. Zhang, K. V. Kovzun, R. M. Pefley, J. Lam, F. H. Zucker, W. C. Van Voorhis, E. A. Merritt, W. G. Hol, C. L. Verlinde, E. Fan, and F. S. Buckner, Antimicrob. Agents Chemother.55:1982–1989, 2011). In order to assess the potential for resistance to develop against this new class of inhibitors,T. bruceicultures were grown in the presence of MetRS inhibitors or comparison drugs. Resistance up to ∼50 times the baseline 50% inhibitory concentration (IC50) was induced against a MetRS inhibitor after ∼120 days. A similar level of resistance to the clinical drug eflornithine was induced after ∼50 days and for pentamidine after ∼80 days. Thus, resistance was induced more slowly against MetRS inhibitors than against clinically used drugs. The parasites resistant to the MetRS inhibitor were shown to overexpress MetRS mRNA by a factor of 35 over the parental strain. Southern analysis indicated that the MetRS gene was amplified in the genome by nearly 8-fold. When injected into mice, the MetRS inhibitor-resistant parasites caused a reduced level of infection, indicating that the changes associated with resistance attenuated their virulence. This finding and the fact that resistance to MetRS inhibitors developed relatively slowly are encouraging for further development of this class of compounds. Published studies on other antitrypanosomal drugs have primarily shown that alterations in membrane transporters were the mechanisms responsible for resistance. This is the first published report of induced drug resistance in the African trypanosome due to overexpression of the target enzyme.


2014 ◽  
Vol 8 (4) ◽  
pp. e2775 ◽  
Author(s):  
Cho Yeow Koh ◽  
Jessica E. Kim ◽  
Allan B. Wetzel ◽  
Will J. de van der Schueren ◽  
Sayaka Shibata ◽  
...  

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