All-Atom Molecular Dynamics Simulation of Multidrug Efflux Transporter AcrB

Biophysical Journal ◽

10.1016/j.bpj.2010.12.3170 ◽

2011 ◽

Vol 100 (3) ◽

pp. 544a

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux

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3P122 All-atom molecular dynamics simulation of multidrug efflux transporter AcrB(Membrane proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s166_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S166

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux ◽

Biophysical Society

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1P-084 All-atom molecular dynamics simulation of bacterial multidrug efflux transporter AcrB(Membrane proteins, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s76_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S76

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux ◽

Biophysical Society

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All-Atom Molecular Dynamics Simulation of Multidrug Efflux Transporter AcrB

Biophysical Journal ◽

10.1016/j.bpj.2011.11.3596 ◽

2012 ◽

Vol 102 (3) ◽

pp. 660a

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux

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Molecular Mechanism of Multi-drug Efflux Transporter, AcrB Revealed by the Synergy between Molecular Dynamics Simulation and Crystallography

Seibutsu Butsuri ◽

10.2142/biophys.55.027 ◽

2015 ◽

Vol 55 (1) ◽

pp. 027-030 ◽

Author(s):

Satoshi MURAKAMI ◽

Tsutomu YAMANE ◽

Mitsunori IKEGUCHI ◽

Shoji TAKADA

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Molecular Mechanism ◽

Dynamics Simulation ◽

Drug Efflux ◽

Efflux Transporter

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All-Atom Molecular Dynamics Simulation of Bacterial Multidrug Efflux Transporters AcrB

Biophysical Journal ◽

10.1016/j.bpj.2009.12.3762 ◽

2010 ◽

Vol 98 (3) ◽

pp. 685a

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Efflux Transporters ◽

Multidrug Efflux

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Rotational dynamics and velocity segregation in plastic KCIO4: a molecular dynamics simulation

Molecular Physics ◽

10.1080/00268979809482256 ◽

1998 ◽

Vol 93 (5) ◽

pp. 703-711

Author(s):

F. AFFOUARD ◽

PH. DEPONDT

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Rotational Dynamics ◽

Dynamics Simulation

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Molecular dynamics simulation of the dynamics of supercooled silica

Philosophical Magazine B ◽

10.1080/014186398259374 ◽

1998 ◽

Vol 77 (2) ◽

pp. 297-303 ◽

Author(s):

J. Horbach, W. Kob, K. Binder

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation

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ACPD ligands for glutamic receptors : conformational analysis by NMR spectroscopy and molecular dynamics. Simulation in water of glutamic acid analogues containing a cyclopentane ring

Journal de Chimie Physique ◽

10.1051/jcp/1995921809 ◽

1995 ◽

Vol 92 ◽

pp. 1809-1812

Author(s):

V Larue ◽

J Gharby-Benarous ◽

D Todeschi ◽

F Acher ◽

R Azerad ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nmr Spectroscopy ◽

Conformational Analysis ◽

Glutamic Acid ◽

Dynamics Simulation ◽

Cyclopentane Ring

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Nonequilibrium effects in electron-ion strongly coupled plasmas. Molecular dynamics simulation

Journal de Physique IV (Proceedings) ◽

10.1051/jp4:2000545 ◽

2000 ◽

Vol 10 (PR5) ◽

pp. Pr5-255-Pr5-258 ◽

Author(s):

G. E. Norman ◽

A. A. Valuev ◽

I. A. Valuev

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Strongly Coupled ◽

Strongly Coupled Plasmas ◽

Nonequilibrium Effects ◽

Coupled Plasmas

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A molecular dynamics simulation for an ODIC phase. - III. Analysis of the correlation functions

Journal de Physique ◽

10.1051/jphys:01987004805082100 ◽

1987 ◽

Vol 48 (5) ◽

pp. 821-835 ◽

Author(s):

Ph. Buchet ◽

R.M. Pick

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Correlation Functions ◽

Dynamics Simulation ◽

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