3P122 All-atom molecular dynamics simulation of multidrug efflux transporter AcrB(Membrane proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux ◽

1P-084 All-atom molecular dynamics simulation of bacterial multidrug efflux transporter AcrB(Membrane proteins, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s76_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S76

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux ◽

3P124 Proton pathway and rotary motion of c-ring in F_o analyzed by all-atom and coarse-grained molecular dynamics simulation.(Membrane proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s166_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S166-S167

Author(s):

Kentaro Fukunaga ◽

Takato Sato ◽

Kyohei Yamamoto ◽

Jun Narita ◽

Mitsunori Takano

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Dynamics Simulation ◽

Coarse Grained ◽

Rotary Motion ◽

Biophysical Society ◽

Coarse Grained Molecular Dynamics

3P121 Conformational change of mouse ABC transporter ABCB1 from an inward-facing conformation as studied by molecular dynamics simulation(Membrane proteins,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s166_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S166

Author(s):

Yurika Watanabe ◽

Daisuke Sato ◽

Minoru Sakurai

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Conformational Change ◽

Abc Transporter ◽

Dynamics Simulation ◽

All-Atom Molecular Dynamics Simulation of Multidrug Efflux Transporter AcrB

Biophysical Journal ◽

10.1016/j.bpj.2010.12.3170 ◽

2011 ◽

Vol 100 (3) ◽

pp. 544a

Author(s):

Tsutomu Yamane ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Dynamics Simulation ◽

Efflux Transporter ◽

Multidrug Efflux

3P243 Analysis of the photoresponse mechanism of the LOV-HTH system using accelerated molecular dynamics simulation(Photobiology: Vision & Photoreception,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s289_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S289

Author(s):

Kokubu Tetsuo ◽

Furuta Tadaomi ◽

Sakurai Minoru

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Dynamics Simulation ◽

Accelerated Molecular Dynamics ◽

1P204 Structure and orientation of hydrating water molecules at phospholipid/water interface revealed by molecular dynamics simulation(13A. Biological & Artificial membrane: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s174_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S174

Author(s):

Suyong Re ◽

Wataru Nishima ◽

Tahei Tahara ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Membrane Structure ◽

Dynamics Simulation ◽

Water Molecules ◽

Water Interface ◽

Structure Property ◽

Artificial Membrane ◽

3M1112 Molecular dynamics simulation for the docking process of myosin against an actin filament(Molecular motor4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s151_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S151-S152

Author(s):

Tadashi Masuda

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Actin Filament ◽

Dynamics Simulation ◽

2PT134 Molecular dynamics simulation study of Lys48-linked diubiquitin in compact conformation(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s127_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S127

Author(s):

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Biophysical Society ◽

Compact Conformation

1SK-01 A class library for developing multi-copy, multi-scale molecular dynamics simulation programs(1SK High Performance Computational Approaches to Biological Functions,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s8_6 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S8-S9

Author(s):

Tohru Terada ◽

Yasuhiro Matsunaga ◽

Kei Moritsugu ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

High Performance ◽

Dynamics Simulation ◽

Biological Functions ◽

Computational Approaches ◽

Multi Scale ◽

Class Library ◽

3P-041 Multicanonical molecular dynamics simulation of an all-β protein with secondary structure restraints(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s157_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S157-S158

Author(s):

Asahiko Nishimura ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Secondary Structure ◽

Annual Meeting ◽

Dynamics Simulation ◽

Β Protein ◽