scholarly journals Real-Time Interactive Visualisation of Large Macromolecular Assemblies and Molecular Machines at Atomic Resolution

2017 ◽  
Vol 112 (3) ◽  
pp. 178a ◽  
Author(s):  
David Sehnal ◽  
Mandar Deshpande ◽  
Radka Svobodova Varekova ◽  
Saquib Mir ◽  
Karel Berka ◽  
...  
2017 ◽  
Author(s):  
James Hadfield ◽  
Colin Megill ◽  
Sidney M. Bell ◽  
John Huddleston ◽  
Barney Potter ◽  
...  

AbstractSummaryUnderstanding the spread and evolution of pathogens is important for effective public health measures and surveillance. Nextstrain consists of a database of viral genomes, a bioinformatics pipeline for phylodynamics analysis, and an interactive visualisation platform. Together these present a real-time view into the evolution and spread of a range of viral pathogens of high public health importance. The visualization integrates sequence data with other data types such as geographic information, serology, or host species. Nextstrain compiles our current understanding into a single accessible location, publicly available for use by health professionals, epidemiologists, virologists and the public alike.Availability and implementationAll code (predominantly JavaScript and Python) is freely available from github.com/nextstrain and the web-application is available at nextstrain.org.


2019 ◽  
Vol 401 (1) ◽  
pp. 183-199 ◽  
Author(s):  
Parijat Majumder ◽  
Wolfgang Baumeister

Abstract Proteasomes are the principal molecular machines for the regulated degradation of intracellular proteins. These self-compartmentalized macromolecular assemblies selectively degrade misfolded, mistranslated, damaged or otherwise unwanted proteins, and play a pivotal role in the maintenance of cellular proteostasis, in stress response, and numerous other processes of vital importance. Whereas the molecular architecture of the proteasome core particle (CP) is universally conserved, the unfoldase modules vary in overall structure, subunit complexity, and regulatory principles. Proteasomal unfoldases are AAA+ ATPases (ATPases associated with a variety of cellular activities) that unfold protein substrates, and translocate them into the CP for degradation. In this review, we summarize the current state of knowledge about proteasome – unfoldase systems in bacteria, archaea, and eukaryotes, the three domains of life.


ChemBioChem ◽  
2007 ◽  
Vol 8 (7) ◽  
pp. 693-693
Author(s):  
Carsten Kötting ◽  
Angela Kallenbach ◽  
Yan Suveyzdis ◽  
Carolin Eichholz ◽  
Klaus Gerwert

2010 ◽  
Vol 5 (10) ◽  
pp. 1697-1708 ◽  
Author(s):  
Matthew L Baker ◽  
Junjie Zhang ◽  
Steven J Ludtke ◽  
Wah Chiu

Author(s):  
A. Akshai R ◽  
◽  
B. Meenakshi S ◽  
C. Rohit Krishnan ◽  
D. S Shweta ◽  
...  

1988 ◽  
Vol 27 (4) ◽  
pp. 555-558 ◽  
Author(s):  
Jan-Olle Malm ◽  
Jan-Olov Bovin ◽  
Amanda Petford-Long ◽  
David J. Smith ◽  
G�nter Schmid ◽  
...  

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