scholarly journals Nucleoprotein Intermediates in HIV-1 DNA Integration Visualized by Atomic Force Microscopy

2010 ◽  
Vol 399 (3) ◽  
pp. 491-500 ◽  
Author(s):  
Svetlana Kotova ◽  
Min Li ◽  
Emilios K. Dimitriadis ◽  
Robert Craigie
2018 ◽  
Vol 92 (20) ◽  
Author(s):  
Sanela Rankovic ◽  
Ruben Ramalho ◽  
Christopher Aiken ◽  
Itay Rousso

ABSTRACTThe RNA genome of human immunodeficiency virus type 1 (HIV-1) is enclosed in a cone-shaped capsid shell that disassembles following cell entry via a process known as uncoating. During HIV-1 infection, the capsid is important for reverse transcription and entry of the virus into the target cell nucleus. The small molecule PF74 inhibits HIV-1 infection at early stages by binding to the capsid and perturbing uncoating. However, the mechanism by which PF74 alters capsid stability and reduces viral infection is presently unknown. Here, we show, using atomic force microscopy (AFM), that binding of PF74 to recombinant capsid-like assemblies and to HIV-1 isolated cores stabilizes the capsid in a concentration-dependent manner. At a PF74 concentration of 10 μM, the mechanical stability of the core is increased to a level similar to that of the intrinsically hyperstable capsid mutant E45A. PF74 also prevented the complete disassembly of HIV-1 cores normally observed during 24 h of reverse transcription. Specifically, cores treated with PF74 only partially disassembled: the main body of the capsid remained intact and stiff, and a cap-like structure dissociated from the narrow end of the core. Moreover, the internal coiled structure that was observed to form during reverse transcriptionin vitropersisted throughout the duration of the measurement (∼24 h). Our results provide direct evidence that PF74 directly stabilizes the HIV-1 capsid lattice, thereby permitting reverse transcription while interfering with a late step in uncoating.IMPORTANCEThe capsid-binding small molecule PF74 inhibits HIV-1 infection at early stages and perturbs uncoating. However, the mechanism by which PF74 alters capsid stability and reduces viral infection is presently unknown. We recently introduced time-lapse atomic force microscopy to study the morphology and physical properties of HIV-1 cores during the course of reverse transcription. Here, we apply this AFM methodology to show that PF74 prevented the complete disassembly of HIV-1 cores normally observed during 24 h of reverse transcription. Specifically, cores with PF74 only partially disassembled: the main body of the capsid remained intact and stiff, but a cap-like structure dissociated from the narrow end of the core HIV-1. Our result provides direct evidence that PF74 directly stabilizes the HIV-1 capsid lattice.


2016 ◽  
Vol 111 (6) ◽  
pp. 1173-1179 ◽  
Author(s):  
Irene González-Domínguez ◽  
Sonia Gutiérrez-Granados ◽  
Laura Cervera ◽  
Francesc Gòdia ◽  
Neus Domingo

PLoS ONE ◽  
2020 ◽  
Vol 15 (2) ◽  
pp. e0228036
Author(s):  
Shaolong Chen ◽  
Jun Xu ◽  
Mingyue Liu ◽  
A. L. N. Rao ◽  
Roya Zandi ◽  
...  

2013 ◽  
Vol 49 (30) ◽  
pp. 3113 ◽  
Author(s):  
Shlomit Guy ◽  
Dvir Rotem ◽  
Zvi Hayouka ◽  
Ronen Gabizon ◽  
Aviad Levin ◽  
...  

2017 ◽  
Vol 91 (12) ◽  
Author(s):  
Sanela Rankovic ◽  
Janani Varadarajan ◽  
Ruben Ramalho ◽  
Christopher Aiken ◽  
Itay Rousso

ABSTRACT The HIV-1 core consists of the viral genomic RNA and several viral proteins encased within a conical capsid. After cell entry, the core disassembles in a process termed uncoating. Although HIV-1 uncoating has been linked to reverse transcription of the viral genome in target cells, the mechanism by which uncoating is initiated is unknown. Using time-lapse atomic force microscopy, we analyzed the morphology and physical properties of isolated HIV-1 cores during the course of reverse transcription in vitro. We found that, during an early stage of reverse transcription the pressure inside the capsid increases, reaching a maximum after 7 h. High-resolution mechanical mapping reveals the formation of a stiff coiled filamentous structure underneath the capsid surface. Subsequently, this coiled structure disappears, the stiffness of the capsid drops precipitously to a value below that of a pre-reverse transcription core, and the capsid undergoes partial or complete rupture near the narrow end of the conical structure. We propose that the transcription of the relatively flexible single-stranded RNA into a more rigid filamentous structure elevates the pressure within the core, which triggers the initiation of capsid disassembly. IMPORTANCE For successful infection, the HIV-1 genome, which is in the form of a single-stranded RNA enclosed inside a capsid shell, must be reverse transcribed into double-stranded DNA and released from the capsid (in a process known as uncoating) before it can be integrated into the target cell genome. The mechanism that triggers uncoating is a pivotal question of long standing. By using atomic force microscopy, we found that during reverse transcription the pressure inside the capsid increases until the internal stress exceeds the strength of the capsid structure and the capsid breaks open. The application of AFM technologies to study purified HIV-1 cores represents a new experimental platform for elucidating additional aspects of capsid disassembly and HIV-1 uncoating.


FEBS Journal ◽  
2009 ◽  
Vol 276 (15) ◽  
pp. 4223-4232 ◽  
Author(s):  
Jesper Pallesen ◽  
Mingdong Dong ◽  
Flemming Besenbacher ◽  
Jørgen Kjems

2018 ◽  
Author(s):  
Selma Dahmane ◽  
Christine Doucet ◽  
Antoine Le Gall ◽  
Célia Chamontin ◽  
Patrice Dosset ◽  
...  

SUMMARYHIV-1 assembly specifically alters both partitioning and dynamics of the tetraspanins CD9 and CD81 forming enriched areas where the virus buds. Importantly the presence of these proteins at exit sites and in viral particles inhibits virus-induced membrane fusion. To get molecular insights into tetraspanins partitioning in this viral context, we correlated nanoscale CD9 mapping obtained by super resolution microscopy to membrane topography probed by Atomic Force Microscopy (AFM). We demonstrated that CD9 is specifically trapped within the nascent viral particles, especially at buds tips, and that Gag mediate CD9 and CD81 depletion from cellular surfaces, even in the absence of Vpu and Nef, resulting from tetraspanins escaping from the plasma membrane during HIV-1 release. In addition, we showed that CD9 is organized as small membrane assemblies of few tens of nanometers that can coalesce upon Gag expression. Our results support a functional redundancy among tetraspanins during HIV release.


2012 ◽  
Vol 102 (3) ◽  
pp. 303a
Author(s):  
Gregory J. Hardy ◽  
Munir Alam ◽  
Joe Shapter ◽  
Stefan Zauscher

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