Molecular dynamics and ligand docking of a hinge region variant of South African HIV-1 subtype C protease

2018 ◽  
Vol 82 ◽  
pp. 1-11 ◽  
Author(s):  
Jake Zondagh ◽  
Vijayakumar Balakrishnan ◽  
Ikechukwu Achilonu ◽  
Heini W. Dirr ◽  
Yasien Sayed
2013 ◽  
Vol 31 (12) ◽  
pp. 1370-1380 ◽  
Author(s):  
Previn Naicker ◽  
Ikechukwu Achilonu ◽  
Sylvia Fanucchi ◽  
Manuel Fernandes ◽  
Mahmoud A.A. Ibrahim ◽  
...  

2019 ◽  
Vol 24 (5) ◽  
pp. 333-342
Author(s):  
Jake Zondagh ◽  
Adriaan E Basson ◽  
Ikechukwu Achilonu ◽  
Lynn Morris ◽  
Heini W Dirr ◽  
...  

mSphere ◽  
2020 ◽  
Vol 5 (1) ◽  
Author(s):  
Zanele Ditse ◽  
Nonhlanhla N. Mkhize ◽  
Michael Yin ◽  
Michael Keefer ◽  
David C. Montefiori ◽  
...  

ABSTRACT Analysis of breakthrough HIV-1 infections could elucidate whether prior vaccination primes relevant immune responses. Here, we measured HIV-specific antibody responses in 14 South African volunteers who acquired HIV infection after participating in phase 1/2 trials of envelope-containing immunogens. Serum samples were collected annually following HIV-1 infection from participants in trials HVTN 073 (subtype C, DNA/MVA, phase 1 trial, n = 1), HVTN 086 (subtype C, DNA/MVA/gp140 protein, phase 1 trial, n = 2), and HVTN 204 (multisubtype, DNA/adenovirus serotype 5 [Ad5], phase 2 trial, n = 7) and 4 placebo recipients. Binding and neutralizing antibody responses to Env proteins and peptides were determined pre- and post-HIV infection using an enzyme-linked immunosorbent assay and the TZM-bl cell neutralization assay, respectively. HIV-infected South African individuals served as unvaccinated controls. Binding antibodies to gp41, V3, V2, the membrane-proximal external region (MPER), and the CD4 binding site were detected from the first year of HIV-1 subtype C infection, and the levels were similar in vaccinated and placebo recipients. Neutralizing antibody responses against tier 1A viruses were detected in all participants, with the highest titers being to a subtype C virus, MW965.26. No responses were observed just prior to infection, indicating that vaccine-primed HIV-specific antibodies had waned. Sporadic neutralization activity against tier 2 isolates was observed after 2 to 3 years of HIV infection, but these responses were similar in the vaccinated and placebo groups as well as the unvaccinated controls. Our data suggest that prior vaccination with these immunogens did not alter the antibody responses to HIV-1 infection, nor did it accelerate the development of HIV neutralization breadth. IMPORTANCE There is a wealth of information on HIV-specific vaccine-induced immune responses among HIV-uninfected participants; however, data on immune responses among participants who acquire HIV after vaccination are limited. Here we show that HIV-specific binding antibody responses in individuals with breakthrough HIV infections were not affected by prior vaccination with HIV envelope-containing immunogens. We also found that these vectored vaccines did not prime tier 2 virus-neutralizing antibody responses, which are thought to be required for prevention against HIV acquisition, or accelerate the development of neutralization breadth. Although this study is limited, such studies can provide insights into whether vaccine-elicited antibody responses are boosted by HIV infection to acquire broader neutralizing activity, which may help to identify antigens relevant to the design of more effective vaccines.


2013 ◽  
Vol 32 (7) ◽  
pp. 560-567 ◽  
Author(s):  
Previn Naicker ◽  
Palesa Seele ◽  
Heini W. Dirr ◽  
Yasien Sayed
Keyword(s):  

2014 ◽  
Vol 59 (9) ◽  
pp. 1322-1331 ◽  
Author(s):  
Koleka Mlisana ◽  
Lise Werner ◽  
Nigel J. Garrett ◽  
Lyle R. McKinnon ◽  
Francois van Loggerenberg ◽  
...  

2018 ◽  
Vol 5 (7) ◽  
pp. e366-e378 ◽  
Author(s):  
Linda-Gail Bekker ◽  
Zoe Moodie ◽  
Nicole Grunenberg ◽  
Fatima Laher ◽  
Georgia D Tomaras ◽  
...  
Keyword(s):  
Phase 1 ◽  
Low Risk ◽  

2006 ◽  
Vol 87 (2) ◽  
pp. 399-410 ◽  
Author(s):  
Wendy A. Burgers ◽  
Joanne H. van Harmelen ◽  
Enid Shephard ◽  
Craig Adams ◽  
Thandiswa Mgwebi ◽  
...  

In this study, the design and preclinical development of a multigene human immunodeficiency virus type 1 (HIV-1) subtype C DNA vaccine are described, developed as part of the South African AIDS Vaccine Initiative (SAAVI). Genetic variation remains a major obstacle in the development of an HIV-1 vaccine and recent strategies have focused on constructing vaccines based on the subtypes dominant in the developing world, where the epidemic is most severe. The vaccine, SAAVI DNA-C, contains an equimolar mixture of two plasmids, pTHr.grttnC and pTHr.gp150CT, which express a polyprotein derived from Gag, reverse transcriptase (RT), Tat and Nef, and a truncated Env, respectively. Genes included in the vaccine were obtained from individuals within 3 months of infection and selection was based on closeness to a South African subtype C consensus sequence. All genes were codon-optimized for increased expression in humans. The genes have been modified for safety, stability and immunogenicity. Tat was inactivated through shuffling of gene fragments, whilst maintaining all potential epitopes; the active site of RT was mutated; 124 aa were removed from the cytoplasmic tail of gp160; and Nef and Gag myristylation sites were inactivated. Following vaccination of BALB/c mice, high levels of cytotoxic T lymphocytes were induced against multiple epitopes and the vaccine stimulated strong CD8+ gamma interferon responses. In addition, high titres of antibodies to gp120 were induced in guinea pigs. This vaccine is the first component of a prime–boost regimen that is scheduled for clinical trials in humans in the USA and South Africa.


2009 ◽  
Vol 28 (12) ◽  
pp. 1123-1125 ◽  
Author(s):  
Carole L. Wallis ◽  
Linda Erasmus ◽  
Sheba Varughese ◽  
Dalu Ndiweni ◽  
Wendy S. Stevens

Sign in / Sign up

Export Citation Format

Share Document