Faeces of marine birds and mammals as substrates for microbial plankton communities

2022 ◽  
pp. 105560
Author(s):  
Pablo Alba González ◽  
Xosé Antón Álvarez-Salgado ◽  
Antonio Cobelo-García ◽  
Joeri Kaal ◽  
Eva Teira
2016 ◽  
Vol 25 (21) ◽  
pp. 5585-5602 ◽  
Author(s):  
Jessica L. Ray ◽  
Julia Althammer ◽  
Katrine S. Skaar ◽  
Paolo Simonelli ◽  
Aud Larsen ◽  
...  

Oikos ◽  
2019 ◽  
Vol 128 (7) ◽  
pp. 1027-1040 ◽  
Author(s):  
Mathilde Cadier ◽  
Ken H. Andersen ◽  
Andre W. Visser ◽  
Thomas Kiørboe

2013 ◽  
Vol 80 (1) ◽  
pp. 328-338 ◽  
Author(s):  
Ian Hewson ◽  
Erin M. Eggleston ◽  
Mary Doherty ◽  
Dong Yoon Lee ◽  
Michael Owens ◽  
...  

ABSTRACTWe used metatranscriptomics to study the gene transcription patterns of microbial plankton (0.2 to 64 μm) at a mesohaline station in the Chesapeake Bay under transitions from oxic to anoxic waters in spring and from anoxic to oxic waters in autumn. Samples were collected from surface (i.e., above pycnocline) waters (3 m) and from waters beneath the pycnocline (16 to 22 m) in both 2010 and 2011. Metatranscriptome profiles based on function and potential phylogeny were different between 2010 and 2011 and strongly variable in 2011. This difference in variability corresponded with a highly variable ratio of eukaryotic to bacterial sequences (0.3 to 5.5), reflecting transient algal blooms in 2011 that were absent in 2010. The similarity between metatranscriptomes changed at a lower rate during the transition from oxic to anoxic waters than after the return to oxic conditions. Transcripts related to photosynthesis and low-affinity cytochrome oxidases were significantly higher in shallow than in deep waters, while in deep water genes involved in anaerobic metabolism, particularly sulfate reduction, succinyl coenzyme A (succinyl-CoA)-to-propionyl-CoA conversion, and menaquinone synthesis, were enriched relative to in shallow waters. Expected transitions in metabolism between oxic and anoxic deep waters were reflected in elevated levels of anaerobic respiratory reductases and utilization of propenediol and acetoin. The percentage of archaeal transcripts increased in both years in late summer (from 0.1 to 4.4% of all transcripts in 2010 and from 0.1 to 6.2% in 2011). Denitrification-related genes were expressed in a predicted pattern during the oxic-anoxic transition. Overall, our data suggest that Chesapeake Bay microbial assemblages express gene suites differently in shallow and deep waters and that differences in deep waters reflect variable redox states.


Oceanologia ◽  
2018 ◽  
Vol 60 (2) ◽  
pp. 139-152 ◽  
Author(s):  
Ulgen Aytan ◽  
Ali Muzaffer Feyzioglu ◽  
Andre Valente ◽  
Ertugrul Agirbas ◽  
Elaine S. Fileman

2020 ◽  
Vol 48 (1) ◽  
pp. 62-72
Author(s):  
E. A. Ershova

Сalanoid copepods of the genus Pseudocalanus play an important role in the plankton communities of the Arctic and boreal seas, often dominating in numbers and constituting a significant proportion of the biomass of zooplankton. Despite their high presence and significance in the shelf plankton communities, species-specific studies of the biology of these are significantly hampered by extremely small morphological differences between them, especially at the juvenile stages, at which they are virtually indistinguishable. In this paper, we describe a new, routine and low-cost molecular method for identifying all Pseudocalanus species found in the Atlantic sector of the Arctic: the Arctic P. acuspes, P. minutus and the boreal P. moultoni and P. elongatus, and apply it to describe the relative distribution of these species in four locations of the Arctic and sub-Arctic. With this method, species-specific polymerase chain reaction (ssPCR), mass identification of individuals of any developmental stage, including nauplii, is possible. This method can serve as an excellent tool for studying the species-specific biology of this group, describing their life cycles, as well as monitoring changes in Arctic marine ecosystems under the influence of changing climate.


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