scholarly journals Site-specific mutagenesis and functional analysis of active sites of sulfur oxygenase reductase from Gram-positive moderate thermophile Sulfobacillus acidophilus TPY

2013 ◽  
Vol 168 (10) ◽  
pp. 654-660 ◽  
Author(s):  
Huijun Zhang ◽  
Wenbin Guo ◽  
Changan Xu ◽  
Hongbo Zhou ◽  
Xinhua Chen
Antibiotics ◽  
2020 ◽  
Vol 9 (7) ◽  
pp. 405
Author(s):  
David L. Lin ◽  
German M. Traglia ◽  
Rachel Baker ◽  
David J. Sherratt ◽  
Maria Soledad Ramirez ◽  
...  

Modules composed of a resistance gene flanked by Xer site-specific recombination sites, the vast majority of which were found in Acinetobacter baumannii, are thought to behave as elements that facilitate horizontal dissemination. The A. baumannii xerC and xerD genes were cloned, and the recombinant clones used to complement the cognate Escherichia coli mutants. The complemented strains supported the resolution of plasmid dimers, and, as is the case with E. coli and Klebsiella pneumoniae plasmids, the activity was enhanced when the cells were grown in a low osmolarity growth medium. Binding experiments showed that the partially purified A. baumannii XerC and XerD proteins (XerCAb and XerDAb) bound synthetic Xer site-specific recombination sites, some of them with a nucleotide sequence deduced from existing A. baumannii plasmids. Incubation with suicide substrates resulted in the covalent attachment of DNA to a recombinase, probably XerCAb, indicating that the first step in the recombination reaction took place. The results described show that XerCAb and XerDAb are functional proteins and support the hypothesis that they participate in horizontal dissemination of resistant genes among bacteria.


2001 ◽  
Vol 276 (49) ◽  
pp. 46612-46623 ◽  
Author(s):  
Apurba Kumar Sau ◽  
Gena DeVue Tribble ◽  
Ian Grainge ◽  
Rikke From Frøhlich ◽  
Birgitta Ruth Knudsen ◽  
...  

Biochemistry ◽  
1992 ◽  
Vol 31 (12) ◽  
pp. 3051-3058 ◽  
Author(s):  
Takeshi Watanabe ◽  
Naohiro Wada ◽  
Janice Yang Chou

2018 ◽  
Author(s):  
Baptiste Castel ◽  
Laurence Tomlinson ◽  
Federica Locci ◽  
Ying Yang ◽  
Jonathan D G Jones

ABSTRACTBacterial CRISPR systems have been widely adopted to create operator-specified site-specific nucleases. Such nuclease action commonly results in loss-of-function alleles, facilitating functional analysis of genes and gene families We conducted a systematic comparison of components and T-DNA architectures for CRISPR-mediated gene editing in Arabidopsis, testing multiple promoters, terminators, sgRNA backbones and Cas9 alleles. We identified a T-DNA architecture that usually results in stable (i.e. homozygous) mutations in the first generation after transformation. Notably, the transcription of sgRNA and Cas9 in head-to-head divergent orientation usually resulted in highly active lines. Our Arabidopsis data may prove useful for optimization of CRISPR methods in other plants.


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