In silico exploration of O-H…X2+ (X=Cu, Ag, Hg) interaction, targeted adsorption zone, charge density iso-surface, O-H proton analysis and topographic parameters theory for calix[6]arene and calix[8]arene as model

2021 ◽  
pp. 116127
Author(s):  
B. Gassoumi ◽  
F.E. Ben Mohamed ◽  
M.E. Castro ◽  
F.J. Melendez ◽  
A. Karayel ◽  
...  
2014 ◽  
Vol 70 (a1) ◽  
pp. C376-C376
Author(s):  
Marlena Gryl ◽  
Tomasz Seidler ◽  
Katarzyna Stadnicka

Technological progress forces improved material performance therefore controlling synthesis of new crystal phases requires moving from the trial-and-error method to comprehensive solutions. Active Pharmaceutical Ingredients (API) are of particular interest in crystal engineering [1]. Molecular flexibility reflected in many polymorphic forms and appropriate spatial distribution of hydrogen bond donors and acceptors make many known drugs useful for designing optically active materials [2]. The effective correlation between properties and structural features of a given material is possible through quantitative crystal engineering combined with in silico crystal engineering. Quantitative crystal engineering utilizes modern charge density analysis and properties calculations, whereas in silico crystal engineering assesses synthon formation capability probing weak interactions existing within the crystal phases. Optical properties of a crystal strongly depend upon spatial distribution of molecules in the crystal structure, as well as on the electronic properties of molecular building blocks (dipole moments, polarizabilities, hyperpolarizabilities)[3]. Recently we have investigated materials based on pharmaceutically active ingredients: barbiturates, antiarrhythmic drugs, alkaloids, combined with organic molecules and/or transition metal salts. Partial results of our research have already been published [2]. Factors that contribute to molecular recognition in the selected polar/chiral crystal phases (derived through charge densityand Hirshfeld Surfaces Analysis) have been determined. The predicted values of refractive indices were confirmed experimentally using the immersion oil method. Second Harmonic Generation efficiency was assessed using a modified Kurtz-Perry technique [2].


Author(s):  
Seyed Ali Elahi ◽  
Petri Tanska ◽  
Rami K. Korhonen ◽  
Rik Lories ◽  
Nele Famaey ◽  
...  

Injurious mechanical loading of articular cartilage and associated lesions compromise the mechanical and structural integrity of joints and contribute to the onset and progression of cartilage degeneration leading to osteoarthritis (OA). Despite extensive in vitro and in vivo research, it remains unclear how the changes in cartilage composition and structure that occur during cartilage degeneration after injury, interact. Recently, in silico techniques provide a unique integrated platform to investigate the causal mechanisms by which the local mechanical environment of injured cartilage drives cartilage degeneration. Here, we introduce a novel integrated Cartilage Adaptive REorientation Degeneration (CARED) algorithm to predict the interaction between degenerative variations in main cartilage constituents, namely collagen fibril disorganization and degradation, proteoglycan (PG) loss, and change in water content. The algorithm iteratively interacts with a finite element (FE) model of a cartilage explant, with and without variable depth to full-thickness defects. In these FE models, intact and injured explants were subjected to normal (2 MPa unconfined compression in 0.1 s) and injurious mechanical loading (4 MPa unconfined compression in 0.1 s). Depending on the mechanical response of the FE model, the collagen fibril orientation and density, PG and water content were iteratively updated. In the CARED model, fixed charge density (FCD) loss and increased water content were related to decrease in PG content. Our model predictions were consistent with earlier experimental studies. In the intact explant model, minimal degenerative changes were observed under normal loading, while the injurious loading caused a reorientation of collagen fibrils toward the direction perpendicular to the surface, intense collagen degradation at the surface, and intense PG loss in the superficial and middle zones. In the injured explant models, normal loading induced intense collagen degradation, collagen reorientation, and PG depletion both on the surface and around the lesion. Our results confirm that the cartilage lesion depth is a crucial parameter affecting tissue degeneration, even under physiological loading conditions. The results suggest that potential fibril reorientation might prevent or slow down fibril degradation under conditions in which the tissue mechanical homeostasis is perturbed like the presence of defects or injurious loading.


Author(s):  
S. Ritchie ◽  
J. C. Bennett ◽  
A. Prodan ◽  
F.W. Boswell ◽  
J.M. Corbett

A continuous sequence of compounds having composition NbxTa1-xTe4; 0 ≤ x ≤ 1 have been studied by electron diffraction and microscopy. Previous studies have shown that the end members of the series, TaTε4 and NbTε4 possess a quasi-one-dimensional character and exhibit charge density wave (CDW) distortions. In these compounds, the subcell structure is tetragonal with axes (a × a × c) and consists of the metal atoms (Nb or Ta) centered within an extended antiprismatic cage of Te atoms. At room temperature, TaTε4 has a commensurate modulation structure with a 2a × 2a × 3c unit cell. In NbTε4, an incommensurate modulation with × ∼ 16c axes is observed. Preliminary studies of the mixed compounds NbxTα1-xTε4 showed a discontinuous jump of the modulation wave vector commensurate to incommensurate when the Nb dopant concentration x, exceeded x ≃ 0.3, In this paper, the nature of the compositional dependence of is studied in greater detail and evidence is presented for a stepwise variation of . This constitutes the first direct evidence for a Devil's staircase in CDW materials.


1995 ◽  
Vol 5 (5) ◽  
pp. 539-545 ◽  
Author(s):  
J. Dumas ◽  
N. Thirion ◽  
M. Almeida ◽  
E. B. Lopes ◽  
M. J. Matos ◽  
...  

1999 ◽  
Vol 09 (PR10) ◽  
pp. Pr10-161-Pr10-163
Author(s):  
H. Matsukawa ◽  
H. Miyake ◽  
M. Yumoto ◽  
H. Fukuyama

1999 ◽  
Vol 09 (PR10) ◽  
pp. Pr10-129-Pr10-132 ◽  
Author(s):  
J. P. McCarten ◽  
T. C. Jones ◽  
X. Wu ◽  
J. H. Miller ◽  
I. Pirtle ◽  
...  

1999 ◽  
Vol 09 (PR10) ◽  
pp. Pr10-65-Pr10-67
Author(s):  
N. Markovic ◽  
M. A.H. Dohmen ◽  
H. S.J. van der Zant

2004 ◽  
Vol 114 ◽  
pp. 149-151 ◽  
Author(s):  
Kyuya Yakushi ◽  
Mikio Uruichi ◽  
Hiroshi Yamamoto ◽  
Reizo Kato

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