Mass spectrometry facility in METU-Central Laboratory, Molecular Biology – Biotechnology R&D Center

2012 ◽  
Vol 29 ◽  
pp. S163
Author(s):  
Tamay Şeker ◽  
Dilek Kincal ◽  
Tuğba Doğan ◽  
Meral Yücel
2011 ◽  
Author(s):  
W. E. Kieser ◽  
X.-L. Zhao ◽  
I. D. Clark ◽  
T. Kotzer ◽  
A. E. Litherland ◽  
...  

2013 ◽  
Vol 41 (1) ◽  
pp. 432-435 ◽  
Author(s):  
Lina Kaminski ◽  
Shai Naparstek ◽  
Lina Kandiba ◽  
Chen Cohen-Rosenzweig ◽  
Adi Arbiv ◽  
...  

Although performed by members of all three domains of life, the archaeal version of N-glycosylation remains the least understood. Studies on Haloferax volcanii have, however, begun to correct this situation. A combination of bioinformatics, molecular biology, biochemical and mass spectrometry approaches have served to delineate the Agl pathway responsible for N-glycosylation of the S-layer glycoprotein, a reporter of this post-translational modification in Hfx. volcanii. More recently, differential N-glycosylation of the S-layer glycoprotein as a function of environmental salinity was demonstrated, showing that this post-translational modification serves an adaptive role in Hfx. volcanii. Furthermore, manipulation of the Agl pathway, together with the capability of Hfx. volcanii to N-glycosylate non-native proteins, forms the basis for establishing this species as a glyco-engineering platform. In the present review, these and other recent findings are addressed.


TCP 2010 ◽  
2011 ◽  
pp. 241-249
Author(s):  
M. Redshaw ◽  
B. R. Barquest ◽  
G. Bollen ◽  
S. E. Bustabad ◽  
C. M. Campbell ◽  
...  

Author(s):  
Pedro Cutillas ◽  
Benedikt M. Kessler

Methodologies for proteomics and metabolomics are providing an unprecedented wealth of insights into cancer molecular biology. Although different techniques for proteomics and metabolomics exist, molecular snapshots in cancer metabolism and alterations in the proteome are mainly possible due to advancements in state-of-the-art mass spectrometry technologies. In this chapter, we describe examples of how proteo-metabolomic approaches are contributing to our understanding of the molecular biology of cancer progression, signalling, survival mechanisms, angiogenesis, and metastasis. We also provide an overview of the translational information (including biomarkers) and clinically relevant insights that proteomics and metabolomics strategies may be able to deliver, despite limitations and technical challenges that still exist. A better understanding of cancer progression and an improvement of clinical outcomes will benefit from precision medicine initiatives, in which appropriate application of proteo-metabolomic methods are key for their success.


Radiocarbon ◽  
2001 ◽  
Vol 43 (2A) ◽  
pp. 163-167 ◽  
Author(s):  
J C Kim ◽  
J H Park ◽  
I C Kim ◽  
C Lee ◽  
M K Cheoun ◽  
...  

The accelerator mass spectrometry facility at the Seoul National University (SNU-AMS) was completed in December 1998 and a report was presented at the Vienna AMS conference in September 1999. At the conference, we described the basic components of our accelerator system and reported the results of the performance test. Since then, extensive testing of the accuracy and reproducibility of the system has been carried out, and about 200 unknown samples have been measured so far. We obtained a precision of 4‰ for modern samples, and an accuracy of approximately 40 yr was demonstrated by analyzing samples that were previously dated with a conventional technique and by other AMS laboratories. We present these results here, together with detailed descriptions of our data-taking and analysis procedures.


Radiocarbon ◽  
1995 ◽  
Vol 37 (2) ◽  
pp. 663-673 ◽  
Author(s):  
Claudio Tuniz ◽  
David Fink ◽  
Michael Hotchkis ◽  
Geraldine Jacobsen ◽  
Ewan Lawson ◽  
...  

The ANTARES accelerator mass spectrometry facility at Lucas Heights Research Laboratory is operational and AMS measurements of 14C, 26Al and 36Cl are being carried out routinely. Measurement of 129I recently commenced and capabilities for other long-lived radioisotopes such as 10Be are being established. The overall aim of the facility is to develop advanced programs in Quaternary science, global climate change, biomedicine and nuclear safeguards.


2020 ◽  
pp. mcp.R120.002277 ◽  
Author(s):  
Nicholas M Riley ◽  
Carolyn R Bertozzi ◽  
Sharon J Pitteri

Glycosylation is a prevalent, yet heterogeneous modification with a broad range of implications in molecular biology. This heterogeneity precludes enrichment strategies that can be universally beneficial for all glycan classes. Thus, choice of enrichment strategy has profound implications on experimental outcomes. Here we review common enrichment strategies used in modern mass spectrometry (MS)-based glycoproteomic experiments, including lectins and other affinity chromatographies, hydrophilic interaction chromatography (HILIC) and its derivatives, porous graphitic carbon (PGC), reversible and irreversible chemical coupling strategies, and chemical biology tools that often leverage bioorthogonal handles. Interest in glycoproteomics continues to surge as MS instrumentation and software improve, so this review aims to help equip researchers with necessary information to choose appropriate enrichment strategies that best complement these efforts.


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