Gastric bypass surgery results in long-term weight loss due to re-routing of the gastro-intestinal
anatomy and dietary intake alterations. Studies have examined protein change during rapid weight
loss (up to 1 year post-surgery), but whether protein changes are maintained long-term after weight
stabilization is unknown. To identify proteins and pathways involved with the long-term beneficial
effects of weight loss, abundances of 1297 blood-circulating proteins were measured at baseline,
2 and 12 years after Roux-en-Y gastric bypass surgery. Protein changes were compared between
234 surgery and 144 non-surgery subjects with severe obesity, with discovery and replication
subgroups. Seventy-one protein changes were associated with 12-year BMI changes and 58 (7
unique) with surgical status. Protein changes, including ApoM, were most strongly associated with
long-term changes in lipids (HDL-C and triglycerides). Inflammation, adipogenesis, cellular
signaling, and complement pathways were implicated. Short-term improvements in protein levels
were maintained long-term, even after some weight regain.