scholarly journals Structural Basis for DNA Strand Separation by the Unconventional Winged-Helix Domain of RecQ Helicase WRN

Structure ◽  
2010 ◽  
Vol 18 (2) ◽  
pp. 177-187 ◽  
Author(s):  
Ken Kitano ◽  
Sun-Yong Kim ◽  
Toshio Hakoshima
2015 ◽  
Vol 43 (17) ◽  
pp. 8551-8563 ◽  
Author(s):  
Yuriy Chaban ◽  
Jonathan A. Stead ◽  
Ksenia Ryzhenkova ◽  
Fiona Whelan ◽  
Ekaterina P. Lamber ◽  
...  

2019 ◽  
Vol 47 (7) ◽  
pp. 3784-3794 ◽  
Author(s):  
Tomio S Takahashi ◽  
Yusuke Sato ◽  
Atsushi Yamagata ◽  
Sakurako Goto-Ito ◽  
Masafumi Saijo ◽  
...  

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Xiang Feng ◽  
Yasunori Noguchi ◽  
Marta Barbon ◽  
Bruce Stillman ◽  
Christian Speck ◽  
...  

AbstractThe Origin Recognition Complex (ORC) binds to sites in chromosomes to specify the location of origins of DNA replication. The S. cerevisiae ORC binds to specific DNA sequences throughout the cell cycle but becomes active only when it binds to the replication initiator Cdc6. It has been unclear at the molecular level how Cdc6 activates ORC, converting it to an active recruiter of the Mcm2-7 hexamer, the core of the replicative helicase. Here we report the cryo-EM structure at 3.3 Å resolution of the yeast ORC–Cdc6 bound to an 85-bp ARS1 origin DNA. The structure reveals that Cdc6 contributes to origin DNA recognition via its winged helix domain (WHD) and its initiator-specific motif. Cdc6 binding rearranges a short α-helix in the Orc1 AAA+ domain and the Orc2 WHD, leading to the activation of the Cdc6 ATPase and the formation of the three sites for the recruitment of Mcm2-7, none of which are present in ORC alone. The results illuminate the molecular mechanism of a critical biochemical step in the licensing of eukaryotic replication origins.


2008 ◽  
Vol 64 (a1) ◽  
pp. C306-C306
Author(s):  
A.C.W. Pike ◽  
B. Shrestha ◽  
N. Burgess-Brown ◽  
L. Muzzolini ◽  
A. Vindigni ◽  
...  
Keyword(s):  

2021 ◽  
Author(s):  
Martin Pacesa ◽  
Martin Jinek

Cas9 is a CRISPR-associated endonuclease capable of RNA-guided, site-specific DNA cleavage. The programmable activity of Cas9 has been widely utilized for genome editing applications. Despite extensive studies, the precise mechanism of target DNA binding and on-/off-target discrimination remains incompletely understood. Here we report cryo-EM structures of intermediate binding states of Streptococcus pyogenes Cas9 that reveal domain rearrangements induced by R-loop propagation and PAM-distal duplex positioning. At early stages of binding, the Cas9 REC2 and REC3 domains form a positively charged cleft that accommodates the PAM-distal duplex of the DNA substrate. Target hybridisation past the seed region positions the guide-target heteroduplex into the central binding channel and results in a conformational rearrangement of the REC lobe. Extension of the R-loop to 16 base pairs triggers the relocation of the HNH domain towards the target DNA strand in a catalytically incompetent conformation. The structures indicate that incomplete target strand pairing fails to induce the conformational displacements necessary for nuclease domain activation. Our results establish a structural basis for target DNA-dependent activation of Cas9 that advances our understanding of its off-target activity and will facilitate the development of novel Cas9 variants and guide RNA designs with enhanced specificity and activity.


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