Towards standards for data exchange and integration and their impact on a public database such as CEBS (Chemical Effects in Biological Systems)

2008 ◽  
Vol 233 (1) ◽  
pp. 54-62 ◽  
Author(s):  
Jennifer M. Fostel
2007 ◽  
Vol 36 (Database) ◽  
pp. D892-D900 ◽  
Author(s):  
M. Waters ◽  
S. Stasiewicz ◽  
B. Alex Merrick ◽  
K. Tomer ◽  
P. Bushel ◽  
...  

Author(s):  
Michael Waters ◽  
Gary Boorman ◽  
Pierre Bushel ◽  
Michael Cunningham ◽  
Rick Irwin ◽  
...  

Homeopathy ◽  
2019 ◽  
Vol 109 (02) ◽  
pp. 079-086 ◽  
Author(s):  
Leoni Villano Bonamin ◽  
Renata Rossettini Palombro Pedro ◽  
Hannah Maureen G. Mota ◽  
Michelle S. Correia Aguiar ◽  
Sandra A. G. Pinto ◽  
...  

Abstract Background The mechanism by which highly diluted and agitated solutions have their effect is still unknown, but the development in recent years of new methods identifying changes in water and solute dipole moments is providing insights into potential modes of action. Objective The objective of the current study was to compare the biological effects of Antimonium crudum (AC) previously obtained by our group and already described in the literature with now measurable physico-chemical effects on solvatochromic dyes. Methods Different dilutions of AC and succussed water have been characterized with respect to their effect on the visible spectra of the solvatochromic dyes methylene violet (MV), a pyridinium phenolate (ET33), and a dimethylamino naphthalenone (BDN) compared with in-vitro action against Leishmania amazonensis-infected macrophages. Results Dye responses varied according to the dye used and the level of AC dilution and results were found to corroborate previously published in-vivo and in-vitro effects of AC. In addition, a very significant enhancement in the absorbance increase of MV was seen using the supernatant from AC 200cH-treated cells (15%; p < 0.0001) over that seen with AC 200cH itself (4%; p = 0.034), suggesting the amplification of ultra-high dilution effects by biological systems. Furthermore, supernatants from AC-treated cells increased the range of dilutions of AC that were capable of producing effects on the spectra of MV. The effect of AC dilutions on dye ET33 was eliminated by a weak electric current passed through potency solutions. Conclusion The data confirm a correspondence between the biological effects of dilutions of AC in-vitro and physico-chemical effects on solvatochromic dyes as measured by changes in their visible spectra. Results also indicate high dilutions of AC are sensitive to exposure to electric currents and biological systems.


Author(s):  
Eric W Sayers ◽  
Mark Cavanaugh ◽  
Karen Clark ◽  
James Ostell ◽  
Kim D Pruitt ◽  
...  

Abstract GenBank® (www.ncbi.nlm.nih.gov/genbank/) is a comprehensive, public database that contains over 6.25 trillion base pairs from over 1.6 billion nucleotide sequences for 450 000 formally described species. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. Recent updates include a new version of Genome Workbench that supports GenBank submissions, new submission wizards for viral genomes, enhancements to BankIt and improved handling of taxonomy for sequences from pathogens.


2020 ◽  
Vol 49 (D1) ◽  
pp. D92-D96
Author(s):  
Eric W Sayers ◽  
Mark Cavanaugh ◽  
Karen Clark ◽  
Kim D Pruitt ◽  
Conrad L Schoch ◽  
...  

Abstract GenBank® (https://www.ncbi.nlm.nih.gov/genbank/) is a comprehensive, public database that contains 9.9 trillion base pairs from over 2.1 billion nucleotide sequences for 478 000 formally described species. Daily data exchange with the European Nucleotide Archive and the DNA Data Bank of Japan ensures worldwide coverage. Recent updates include new resources for data from the SARS-CoV-2 virus, updates to the NCBI Submission Portal and associated submission wizards for dengue and SARS-CoV-2 viruses, new taxonomy queries for viruses and prokaryotes, and simplified submission processes for EST and GSS sequences.


2005 ◽  
pp. 201-232
Author(s):  
Michael Waters ◽  
Gary Boorman ◽  
Pierre Bushel ◽  
Michael Cunningham ◽  
Rick Irwin ◽  
...  

2006 ◽  
Vol 22 (7) ◽  
pp. 874-882 ◽  
Author(s):  
S. Xirasagar ◽  
S. F. Gustafson ◽  
C.-C. Huang ◽  
Q. Pan ◽  
J. Fostel ◽  
...  

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