Evaluation of predictive in silico models for mutagenicity prediction of food and feed ingredients

2017 ◽  
Vol 280 ◽  
pp. S288
Author(s):  
Anna Vuorinen ◽  
Phillip Bellion ◽  
Paul Beilstein
2017 ◽  
Vol 90 ◽  
pp. 277-288 ◽  
Author(s):  
Anna Vuorinen ◽  
Phillip Bellion ◽  
Paul Beilstein

2021 ◽  
Vol 350 ◽  
pp. S64-S65
Author(s):  
K. Kopanska ◽  
J.C. Gómez-Tamayo ◽  
J. Llopis-Lorente ◽  
B.A. Trenor-Gomis ◽  
J. Sáiz ◽  
...  

Author(s):  
Juri A. Steiner ◽  
Urs A.T. Hofmann ◽  
Patrik Christen ◽  
Jean M. Favre ◽  
Stephen J. Ferguson ◽  
...  

2019 ◽  
Author(s):  
Rubén Laplaza ◽  
Julia Contreras-García ◽  
Franck Fuster ◽  
François Volatron ◽  
Patrick Chaquin

<div>This article dwells on the nature of “inverted bonds”, which make reference to the σ interaction between two s-p hybrids by their smaller lobes, and their presence in [1.1.1]propellane <b>1</b>. Firstly we study H 3 C-C models of C-C bonds with frozen HCC angles reproducing the constraints of various degrees of “inversion”. Secondly, the molecular orbital (MO) properties of [1.1.1]propellane <b>1</b> and [1.1.1]bicyclopentane <b>2</b> are analyzed with the help of orbital forces as a criterion of bonding/antibonding character and as a basis to evaluate bond energies. Triplet and cationic state of <b>1</b> species are also considered to confirm the bonding/antibonding character of MOs in the parent molecule. These approaches show an essentially non-bonding character of the σ central CC interaction in propellane. Within MO theory, this bonding is thus only due to π-type MOs (also called ‘banana’ MOs or ‘bridge’ MOs) and its total energy is evaluated to ca. 50 kcal/mol. In bicyclopentane <b>2</b>, despite a strong σ-type repulsion, a weak bonding (15-20 kcal/mol) exists between both central CC, also due to π-type interactions, though no bond is present in the Lewis structure. Overall, the so-called ‘inverted’ bond, as resulting from a σ overlap of the two s-p hybrids by their smaller lobes, appears highly questionable.</div>


2022 ◽  
Vol 9 (1) ◽  
pp. 28
Author(s):  
Henry Sutanto

The excitation, contraction, and relaxation of an atrial cardiomyocyte are maintained by the activation and inactivation of numerous cardiac ion channels. Their collaborative efforts cause time-dependent changes of membrane potential, generating an action potential (AP), which is a surrogate marker of atrial arrhythmias. Recently, computational models of atrial electrophysiology emerged as a modality to investigate arrhythmia mechanisms and to predict the outcome of antiarrhythmic therapies. However, the individual contribution of atrial ion channels on atrial action potential and reentrant arrhythmia is not yet fully understood. Thus, in this multiscale in-silico study, perturbations of individual atrial ionic currents (INa, Ito, ICaL, IKur, IKr, IKs, IK1, INCX and INaK) in two in-silico models of human atrial cardiomyocyte (i.e., Courtemanche-1998 and Grandi-2011) were performed at both cellular and tissue levels. The results show that the inhibition of ICaL and INCX resulted in AP shortening, while the inhibition of IKur, IKr, IKs, IK1 and INaK prolonged AP duration (APD). Particularly, in-silico perturbations (inhibition and upregulation) of IKr and IKs only minorly affected atrial repolarization in the Grandi model. In contrast, in the Courtemanche model, the inhibition of IKr and IKs significantly prolonged APD and vice versa. Additionally, a 50% reduction of Ito density abbreviated APD in the Courtemanche model, while the same perturbation prolonged APD in the Grandi model. Similarly, a strong model dependence was also observed at tissue scale, with an observable IK1-mediated reentry stabilizing effect in the Courtemanche model but not in the Grandi atrial model. Moreover, the Grandi model was highly sensitive to a change on intracellular Ca2+ concentration, promoting a repolarization failure in ICaL upregulation above 150% and facilitating reentrant spiral waves stabilization by ICaL inhibition. Finally, by incorporating the previously published atrial fibrillation (AF)-associated ionic remodeling in the Courtemanche atrial model, in-silico modeling revealed the antiarrhythmic effect of IKr inhibition in both acute and chronic settings. Overall, our multiscale computational study highlights the strong model-dependent effects of ionic perturbations which could affect the model’s accuracy, interpretability, and prediction. This observation also suggests the need for a careful selection of in-silico models of atrial electrophysiology to achieve specific research aims.


2018 ◽  
Vol 163 (2) ◽  
pp. 632-638 ◽  
Author(s):  
Melissa Van Bossuyt ◽  
Els Van Hoeck ◽  
Giuseppa Raitano ◽  
Tamara Vanhaecke ◽  
Emilio Benfenati ◽  
...  

2015 ◽  
Vol 105 (4) ◽  
pp. 439-448 ◽  
Author(s):  
D. J. Duncker ◽  
J. Bakkers ◽  
B. J. Brundel ◽  
J. Robbins ◽  
J. C. Tardiff ◽  
...  
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