Comparative analysis of virus-specific small RNA profiles of three biologically distinct strains of Potato virus Y in infected potato (Solanum tuberosum) cv. Russet Burbank

2014 ◽  
Vol 191 ◽  
pp. 153-160 ◽  
Author(s):  
Khalid Naveed ◽  
Neena Mitter ◽  
Artemus Harper ◽  
Amit Dhingra ◽  
Hanu.R. Pappu
2020 ◽  
Vol 10 ◽  
Author(s):  
Edyta Deja-Sikora ◽  
Anita Kowalczyk ◽  
Alina Trejgell ◽  
Adriana Szmidt-Jaworska ◽  
Christel Baum ◽  
...  

2016 ◽  
Vol 34 (3) ◽  
pp. 317-328 ◽  
Author(s):  
Pablo Gutiérrez S. ◽  
Mauricio Marín M. ◽  
Daniel Muñoz E.

Potato virus Y (PVY) is one of the most severe viruses affecting the production of potato (Solanum tuberosum) in the world. This study presents a detailed molecular analysis using nextgeneration sequencing (NGS), IC-RT-qPCR and RT-PCR on the PVY isolates infecting seed-tubers and foliage of potato plants cv. Diacol-Capiro in La Union (Antioquia, Colombia). Analysis of incidence by IC-RT-qPCR in 15 random leaf samples of three cultivation plots and fifteen sprouting tuber eye-buds reveal infection levels between 13.4 and 80%; a higher incidence of 86.7% was observed in seed-tuber samples with threshold cycle (Ct) values as low as 24.3. Genome assembly from a bulk of foliage samples resulted in a consensus PVY genome (PVY_LaUnionF) of 9,702 nt and 399 polymorphic sites within the polyprotein ORF; while the assembled genome from sprouts of tubers has 9,704 nt (PVY_LaUnionT) and contained only six polymorphic nucleotide sites. Phylogenetic analysis demonstrates that the PVY isolates from leaf samples are in the recombinant PVYNTN group (sequence identity >99%); while those from tuber sprouts are in the PVYN/NTN group with identities above 95%. Sanger sequencing of viral capsid suggests the presence of a third variant related to PVYO, a prevalent strain reported in potato fields worldwide.


Plant Disease ◽  
2006 ◽  
Vol 90 (1) ◽  
pp. 73-76 ◽  
Author(s):  
Jonathan L. Whitworth ◽  
Phil Nolte ◽  
Chris McIntosh ◽  
Robert Davidson

Previous studies have shown that Potato virus Y (PVY) reduces yield in many cultivars. Typical foliar symptoms can include veinal necrosis, leaf drop, and a mosaic pattern sometimes accompanied by leaf roughness. Infection by PVY in Russet Burbank produces identifiable PVY symptoms, whereas cv. Russet Norkotah expresses mild, almost latent symptoms. Yield also is influenced by nitrogen fertilizer levels. This research was conducted to determine whether increased nitrogen mitigates yield reduction caused by PVY. Russet Norkotah, CO80011-5, and Russet Burbank were used in replicated plots of non-PVY-infected and PVY-infected plants at three nitrogen levels in 1995 and 1996. There was a significant yield reduction between PVY-negative and PVY-positive plots in all cultivars, at most nitrogen levels. PVY yield reduction was similar (approximately 38%) in the mild symptom expression clones of Russet Norkotah and CO80011-5, whereas the yield reduction in Russet Burbank, which exhibits typical symptom expression, was 63.5%. We conclude that increased nitrogen can influence total yield, but does not significantly mitigate the yield reduction due to PVY infection.


2008 ◽  
Vol 116 (5) ◽  
pp. 691-700 ◽  
Author(s):  
Ramona Thieme ◽  
Elena Rakosy-Tican ◽  
Tatjana Gavrilenko ◽  
Olga Antonova ◽  
Jörg Schubert ◽  
...  

2018 ◽  
Vol 47 (3) ◽  
pp. 654-659
Author(s):  
Alexzandra F Murphy ◽  
Silvia I Rondon ◽  
Aranzazu Moreno ◽  
Alberto Fereres

Proteomes ◽  
2017 ◽  
Vol 5 (4) ◽  
pp. 14 ◽  
Author(s):  
Tjaša Stare ◽  
Katja Stare ◽  
Wolfram Weckwerth ◽  
Stefanie Wienkoop ◽  
Kristina Gruden

2017 ◽  
Vol 66 (4) ◽  
pp. 625-632 ◽  
Author(s):  
Héctor Camilo Medina Cárdenas ◽  
Pablo Andrés Gutiérrez Sánchez ◽  
Mauricio Alejandro Marín Montoya

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