scholarly journals Theory and practice of using solvent paramagnetic relaxation enhancement to characterize protein conformational dynamics

Methods ◽  
2018 ◽  
Vol 148 ◽  
pp. 48-56 ◽  
Author(s):  
Zhou Gong ◽  
Charles D. Schwieters ◽  
Chun Tang
2020 ◽  
Vol 21 (11) ◽  
pp. 3920
Author(s):  
Ryosuke Kawasaki ◽  
Shin-ichi Tate

Tau forms intracellular insoluble aggregates as a neuropathological hallmark of Alzheimer’s disease. Tau is largely unstructured, which complicates the characterization of the tau aggregation process. Recent studies have demonstrated that tau samples two distinct conformational ensembles, each of which contains the soluble and aggregation-prone states of tau. A shift to populate the aggregation-prone ensemble may promote tau fibrillization. However, the mechanism of this ensemble transition remains elusive. In this study, we explored the conformational dynamics of a tau fragment by using paramagnetic relaxation enhancement (PRE) and interference (PRI) NMR experiments. The PRE correlation map showed that tau is composed of segments consisting of residues in correlated motions. Intriguingly, residues forming the β-structures in the heparin-induced tau filament coincide with residues in these segments, suggesting that each segment behaves as a structural unit in fibrillization. PRI data demonstrated that the P301L mutation exclusively alters the transiently formed tau structures by changing the short- and long-range correlated motions among residues. The transient conformations of P301L tau expose the amyloid motif PHF6 to promote tau self-aggregation. We propose the correlated motions among residues within tau determine the population sizes of the conformational ensembles, and perturbing the correlated motions populates the aggregation-prone form.


Biochemistry ◽  
2015 ◽  
Vol 54 (46) ◽  
pp. 6876-6886 ◽  
Author(s):  
Francisco N. Newby ◽  
Alfonso De Simone ◽  
Maho Yagi-Utsumi ◽  
Xavier Salvatella ◽  
Christopher M. Dobson ◽  
...  

2020 ◽  
Vol 124 (7) ◽  
pp. 4320-4329
Author(s):  
Rustem Zairov ◽  
Silvia Pizzanelli ◽  
Alexey P. Dovzhenko ◽  
Irek Nizameev ◽  
Anton Orekhov ◽  
...  

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