Repair activities of 8-oxoguanine DNA glycosylase from Archaeoglobus fulgidus, a hyperthermophilic archaeon

2001 ◽  
Vol 486 (2) ◽  
pp. 99-111 ◽  
Author(s):  
Ji Hyung Chung ◽  
Moo-Jin Suh ◽  
Young In Park ◽  
John A. Tainer ◽  
Ye Sun Han
FEBS Journal ◽  
2007 ◽  
Vol 274 (3) ◽  
pp. 805-814 ◽  
Author(s):  
Motomichi Murakami ◽  
Kyohei Shibuya ◽  
Toru Nakayama ◽  
Tokuzo Nishino ◽  
Tohru Yoshimura ◽  
...  

2014 ◽  
Vol 61 (2) ◽  
Author(s):  
Ingeborg Knævelsrud ◽  
Sabina Kazazic ◽  
Nils-Kåre Birkeland ◽  
Svein Bjelland

Uracil-DNA glycosylase of Archaeoglobus fulgidus (Afung) in cell extracts exhibited maximal activity around pH 6.2 as compared to pH 4.8 for the purified recombinant enzyme expressed in Escherichia coli. Native Afung thus seems to be adapted to the intracellular pH of A. fulgidus, determined to be 7.0±0.1. Both recombinant and native Afung exhibited a broad temperature optimum for activity around 80°C, reflecting the A. fulgidus optimal growth temperature of 83°C. Adaption to the neutral conditions in the A. fulgidus cytoplasm might be due to covalent modifications or accessory factors, or due to a different folding when expressed in the native host.


Author(s):  
Cornelia U. Welte ◽  
Rob de Graaf ◽  
Paula Dalcin Martins ◽  
Robert S. Jansen ◽  
Mike S.M. Jetten ◽  
...  

Extremophiles ◽  
2001 ◽  
Vol 5 (5) ◽  
pp. 323-332 ◽  
Author(s):  
Servé Kengen ◽  
Floris Bikker ◽  
Wilfred Hagen ◽  
Willem Vos ◽  
John Oost

2005 ◽  
Vol 187 (6) ◽  
pp. 1937-1944 ◽  
Author(s):  
Hisashi Hemmi ◽  
Yoshihiro Takahashi ◽  
Kyohei Shibuya ◽  
Toru Nakayama ◽  
Tokuzo Nishino

ABSTRACT Four genes that encode the homologues of plant geranylgeranyl reductase were isolated from a hyperthermophilic archaeon Archaeoglobus fulgidus, which produces menaquinone with a fully saturated heptaprenyl side chain, menaquinone-7(14H). The recombinant expression of one of the homologues in Escherichia coli led to a distinct change in the quinone profile of the host cells, although the homologue is the most distantly related to the geranylgeranyl reductase. The new compounds found in the profile had successively longer elution times than those of ordinary quinones from E. coli, i.e., menaquinone-8 and ubiquinone-8, in high-performance liquid chromatography on a reversed-phase column. Structural analyses of the new compounds by electron impact-mass spectrometry indicated that their molecular masses progressively increase relative to the ordinary quinones at a rate of 2 U but that they still contain quinone head structures, strongly suggesting that the compounds are quinones with partially saturated prenyl side chains. In vitro assays with dithionite as the reducing agent showed that the prenyl reductase is highly specific for menaquinone-7, rather than ubiquinone-8 and prenyl diphosphates. This novel enzyme noncovalently binds flavin adenine dinucleotide, similar to geranylgeranyl reductase, but was not able to utilize NAD(P)H as the electron donor, unlike the plant homologue.


2000 ◽  
Vol 182 (5) ◽  
pp. 1272-1279 ◽  
Author(s):  
Hanjing Yang ◽  
Sorel Fitz-Gibbon ◽  
Edward M. Marcotte ◽  
Jennifer H. Tai ◽  
Elizabeth C. Hyman ◽  
...  

ABSTRACT U/G and T/G mismatches commonly occur due to spontaneous deamination of cytosine and 5-methylcytosine in double-stranded DNA. This mutagenic effect is particularly strong for extreme thermophiles, since the spontaneous deamination reaction is much enhanced at high temperature. Previously, a U/G and T/G mismatch-specific glycosylase (Mth-MIG) was found on a cryptic plasmid of the archaeonMethanobacterium thermoautotrophicum, a thermophile with an optimal growth temperature of 65°C. We report characterization of a putative DNA glycosylase from the hyperthermophilic archaeonPyrobaculum aerophilum, whose optimal growth temperature is 100°C. The open reading frame was first identified through a genome sequencing project in our laboratory. The predicted product of 230 amino acids shares significant sequence homology to [4Fe-4S]-containing Nth/MutY DNA glycosylases. The histidine-tagged recombinant protein was expressed in Escherichia coli and purified. It is thermostable and displays DNA glycosylase activities specific to U/G and T/G mismatches with an uncoupled AP lyase activity. It also processes U/7,8-dihydro-oxoguanine and T/7,8-dihydro-oxoguanine mismatches. We designate it Pa-MIG. Using sequence comparisons among complete bacterial and archaeal genomes, we have uncovered a putative MIG protein from another hyperthermophilic archaeon, Aeropyrum pernix. The unique conserved amino acid motifs of MIG proteins are proposed to distinguish MIG proteins from the closely related Nth/MutY DNA glycosylases.


Structure ◽  
2005 ◽  
Vol 13 (4) ◽  
pp. 637-648 ◽  
Author(s):  
Eric Johnson ◽  
Duilio Cascio ◽  
Michael R. Sawaya ◽  
Mari Gingery ◽  
Imke Schröder

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