Measurements in 3D images

Author(s):  
John C. Russ

Three-dimensional (3D) images consisting of arrays of voxels can now be routinely obtained from several different types of microscopes. These include both the transmission and emission modes of the confocal scanning laser microscope (but not its most common reflection mode), the secondary ion mass spectrometer, and computed tomography using electrons, X-rays or other signals. Compared to the traditional use of serial sectioning (which includes sequential polishing of hard materials), these newer techniques eliminate difficulties of alignment of slices, and maintain uniform resolution in the depth direction. However, the resolution in the z-direction may be different from that within each image plane, which makes the voxels non-cubic and creates some difficulties for subsequent analysis.

Author(s):  
S. Kayali ◽  
H. Ancin ◽  
B. Roysam ◽  
W. Shain ◽  
D.H. Szarowski ◽  
...  

The confocal scanning laser microscope (CSLM) provides three-dimensional (3-D) images from fixed tissues. These images are obtained by stacking consecutive confocal planes through the depth of a specimen. We have developed software for quantitative analysis of these data sets and have applied these methods to cell counting. A major issue in this analysis is the relative intensity of signal measured from like objects through the depth of the specimen.The rat hippocampus was chosen to test the attenuation of the fluorescence signal allowing us to make observations in areas of higher density-pyramidal cell layer-and lower density -extra-pyramidal regions. Paraformaldehyde fixed specimens were stained with Feulgen-Schiffs acriflavine. This stain was selected for its fluorescent properties and its high DNA specificity. Specimens were mounted in media with different glycerol concentrations. Significant attenuation was observed using a 50:50 mixture of glycerol and buffer, while 100% glycerol provided significantly less attenuation. All data presented here were collected using sections mounted in 100% glycerol. 3-D images were collected from 50-, 75-, and 100-μm thick sections with a 40x oil objective, having an (x,y) resolution of 2 pixels//xm and a distance of 1 fim between optical sections. Fig. 1 is a projection of a 100-μm section of the rat hippocampus illustrating pyramidal and extra-pyramidal areas.


Author(s):  
JS Deitch ◽  
KL Smith ◽  
C Lee ◽  
JW Swann ◽  
JN Turner

The ability to correlate neuronal morphology and physiology has been greatly advanced by intracellular labeling through the recording pipette. However, visualizing the filled neuron required physically sectioning and reconstructing areas of interest, often resulting in figures that are two-dimensional. We have visualized the three-dimensional morphology of filled neurons reacted with nickel-intensified diaminobenzidine (DAB/Ni) using the confocal scanning laser microscope (CSLM).Neurons in slices of rat hippocampus were filled with biocytin, fixed in 4% paraformaldehyde, incubated in avidin-HRP (1:200) in 0.5% Triton X-100, and reacted with DAB in 0.04% nickel ammonium sulfate. Optical sections and three-dimensional images were recorded by using a Bio Rad MRC-500 CSLM with an argon ion laser.Biocytin filled all aspects of the neuron, including fine axons and spines. Fig. 1 is a conventional micrograph of a single neuron labeled with DAB/Ni. Figs. 2a and b are stereo pairs of the apical and basal dendrites of the neuron in Fig. 1.


Author(s):  
JS Deitch ◽  
KL Smith ◽  
JW Swann ◽  
JN Turner

Neurons labeled with horseradish peroxidase and reacted with diaminobenzidine (DAB) can be imaged using a confocal scanning laser microscope (CSLM) in the reflection mode. In contrast to fluorescent markers, the DAB reaction product is thought to be stable and can be observed by both light and electron microscopy. We have investigated the sensitivity of the DAB reaction product to laser irradiation, and present the spectrophotometric properties of DAB before and after exposure in the CSLM.Pyramidal neurons in slices of rat hippocampus were injected with biocytin (a biotin-lysine complex), fixed overnight in 4% paraformaldehyde, and vibratome sectioned at 75 μm. Biocytin was detected with avidin-HRP (1:200) in 0.5% Triton X-100, incubated in DAB (0.5 mg/ml) with or without 0.04% nickel ammonium sulfate (Ni), dehydrated, and imaged in a Bio Rad MRC-500 CSLM with an argon ion laser (488 and 514 nm). Spectrophotometric measurements of the soma were made on a Zeiss microspectrophotometer, as a function of laser exposure (100-1000 scans) and staining protocol.


2016 ◽  
Vol 3 ◽  
pp. 184954351667080 ◽  
Author(s):  
Ritu Malik ◽  
Ketan Pancholi ◽  
Andreas Melzer

Liposome–microbubble conjugates are considered as better targeted drug delivery vehicles compared to microbubbles alone. The microbubble in the integrated drug delivery system delivers the drug intracellularly on the target, whereas the liposome component allows loading of high drug dose and extravasation through leaky vasculature. In this work, a new high yielding microbubble production method was used to prepare microbubbles for formulation of the liposome-conjugated drug delivery system. In formulation process, the prepared liposome of 200 nm diameter was attached to the microbubble surface using the avidin–biotin interaction. The analysis of the confocal scanning laser microscope images showed that approximately 8 × 108 microbubbles per millilitre (range: 2–7 μm, mean size 5 ± 0.5 μm) can be efficiently conjugated to the liposomes. The method of conjugation was found to be effective in attaching liposome to microbubbles.


Nephron ◽  
1995 ◽  
Vol 70 (2) ◽  
pp. 171-179 ◽  
Author(s):  
Toru Hyodo ◽  
Ikuo Miyagawa ◽  
Akihiro Iino ◽  
Koji Ono ◽  
Tsutomu Kuomi ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document