scholarly journals Template-Directed Catalysis of a Multistep Reaction Pathway for Nonenzymatic RNA Primer Extension

Biochemistry ◽  
2018 ◽  
Vol 58 (6) ◽  
pp. 755-762 ◽  
Author(s):  
Travis Walton ◽  
Lydia Pazienza ◽  
Jack W. Szostak
Keyword(s):  
Reaction Pathway ◽  
Primer Extension ◽  
Multistep Reaction

Dehalogenation of 5-bromouracil by bisulfite buffers. Kinetic evidence for a multistep reaction pathway

1975 ◽  
Vol 97 (19) ◽  
pp. 5572-5577 ◽  
Author(s):  
Frank A. Sedor ◽  
Dan G. Jacobson ◽  
Eugene G. Sander
Keyword(s):  
Reaction Pathway ◽  
Multistep Reaction

scholarly journals Mechanistic Insights into Water-Catalyzed Formation of Levoglucosenone from Anhydrosugar Intermediates by Means of High-Level Theoretical Procedures

2016 ◽  
Vol 69 (9) ◽  
pp. 943 ◽  
Author(s):  
Wenchao Wan ◽  
Li-Juan Yu ◽  
Amir Karton
Keyword(s):  
Activation Energy ◽  
Reaction Mechanism ◽  
Ring Opening ◽  
Reaction Pathway ◽  
Fast Pyrolysis ◽  
Rate Determining Step ◽  
Dehydration Reactions ◽  
High Level ◽  
Multistep Reaction ◽  
Hydration And Dehydration

Levoglucosenone (LGO) is an important anhydrosugar product of fast pyrolysis of cellulose and biomass. We use the high-level G4(MP2) thermochemical protocol to study the reaction mechanism for the formation of LGO from the 1,4:3,6-dianhydro-α-d-glucopyranose (DGP) pyrolysis intermediate. We find that the DGP-to-LGO conversion proceeds via a multistep reaction mechanism, which involves ring-opening, ring-closing, enol-to-keto tautomerization, hydration, and dehydration reactions. The rate-determining step for the uncatalyzed process is the enol-to-keto tautomerization (ΔG‡298 = 68.6 kcal mol–1). We find that a water molecule can catalyze five of the seven steps in the reaction pathway. In the water-catalyzed process, the barrier for the enol-to-keto tautomerization is reduced by as much as 15.1 kcal mol–1, and the hydration step becomes the rate-determining step with an activation energy of ΔG‡298 = 58.1 kcal mol–1.

Tetraphenylethylene AIEgen bearing thiophenylbipyridine receptor for selective detection of copper(II) ion

2021 ◽  
Author(s):  
Dinesh N Nadimetla ◽  
Sheshanath Bhosale
Keyword(s):  
Reaction Pathway ◽  
Selective Detection ◽  
Multistep Reaction

Highly emissive tetraphenylethylene (TPE) chromophore appended thiophenylbipyridine pendant as a receptor (1) site has been successively synthesized via multistep reaction pathway. The synthesized chromophore 1 was been well characterized by...

scholarly journals Multistep Reaction Pathway for CO 2 Reduction on Hydride‐Capped Si Nanosheets

ChemCatChem ◽  
2020 ◽  
Vol 12 (3) ◽  
pp. 722-725 ◽  
Author(s):  
Lixue Xia ◽  
Xiaobin Liao ◽  
Qiu He ◽  
Huan Wang ◽  
Yan Zhao ◽  
...  
Keyword(s):  
Reaction Pathway ◽  
Multistep Reaction

Catalytic Resonance Theory: Parallel Reaction Pathway Control

2019 ◽  
Author(s):  
M. Alexander Ardagh ◽  
Manish Shetty ◽  
Anatoliy Kuznetsov ◽  
Qi Zhang ◽  
Phillip Christopher ◽  
...  
Keyword(s):  
Chemical Reactions ◽  
Active Site ◽  
Active Sites ◽  
Reaction Pathway ◽  
Control Strategies ◽  
Oscillation Amplitude ◽  
Catalytic Performance ◽  
Parallel Reaction ◽  
Resonance Theory ◽  
Static Conditions

Catalytic enhancement of chemical reactions via heterogeneous materials occurs through stabilization of transition states at designed active sites, but dramatically greater rate acceleration on that same active site is achieved when the surface intermediates oscillate in binding energy. The applied oscillation amplitude and frequency can accelerate reactions orders of magnitude above the catalytic rates of static systems, provided the active site dynamics are tuned to the natural frequencies of the surface chemistry. In this work, differences in the characteristics of parallel reactions are exploited via selective application of active site dynamics (0 < ΔU < 1.0 eV amplitude, 10<sup>-6</sup> < f < 10<sup>4</sup> Hz frequency) to control the extent of competing reactions occurring on the shared catalytic surface. Simulation of multiple parallel reaction systems with broad range of variation in chemical parameters revealed that parallel chemistries are highly tunable in selectivity between either pure product, even when specific products are not selectively produced under static conditions. Two mechanisms leading to dynamic selectivity control were identified: (i) surface thermodynamic control of one product species under strong binding conditions, or (ii) catalytic resonance of the kinetics of one reaction over the other. These dynamic parallel pathway control strategies applied to a host of chemical conditions indicate significant potential for improving the catalytic performance of many important industrial chemical reactions beyond their existing static performance.

A Paramedic Treatment for Modeling Explicitly Solvated Chemical Reaction Mechanisms

2018 ◽  
Author(s):  
Yasemin Basdogan ◽  
John Keith
Keyword(s):  
Reaction Mechanism ◽  
Chemical Reaction ◽  
Reaction Mechanisms ◽  
Reaction Pathway ◽  
Optimization Procedure ◽  
Cost Effective ◽  
Chemical Reaction Mechanisms ◽  
Solvent Molecules ◽  
Dynamics Simulations ◽  
Mbh Reaction

<div> <div> <div> <p>We report a static quantum chemistry modeling treatment to study how solvent molecules affect chemical reaction mechanisms without dynamics simulations. This modeling scheme uses a global optimization procedure to identify low energy intermediate states with different numbers of explicit solvent molecules and then the growing string method to locate sequential transition states along a reaction pathway. Testing this approach on the acid-catalyzed Morita-Baylis-Hillman (MBH) reaction in methanol, we found a reaction mechanism that is consistent with both recent experiments and computationally intensive dynamics simulations with explicit solvation. In doing so, we explain unphysical pitfalls that obfuscate computational modeling that uses microsolvated reaction intermediates. This new paramedic approach can promisingly capture essential physical chemistry of the complicated and multistep MBH reaction mechanism, and the energy profiles found with this model appear reasonably insensitive to the level of theory used for energy calculations. Thus, it should be a useful and computationally cost-effective approach for modeling solvent mediated reaction mechanisms when dynamics simulations are not possible. </p> </div> </div> </div>

Photocatalytic Alkylation of Pyrroles and Indoles with α-Diazo Esters

2019 ◽  
Author(s):  
Łukasz Ciszewski ◽  
Jakub Durka ◽  
Dorota Gryko
Keyword(s):  
Aromatic Compounds ◽  
Reaction Pathway ◽  
Alkylating Agents ◽  
Catalytic Amount ◽  
Radical Formation ◽  
Reaction Selectivity ◽  
Diazo Esters ◽  
Electron Withdrawing Substituents

This article describes direct photoalkylation of electron-rich aromatic compounds with diazo compoiunds. C-2 alkylated indoles and pyrroles are obtained with good yields even though the photocatalyst (Ru(bpy)3Cl2) loading is as low as 0.075 mol %. For substrates bearing electron-withdrawing substituents the addition of a catalytic amount of N,N-dimethyl-4-methoxyaniline is required. Both EWG-EWG and EWG-EDG substituted diazo esters are suitable as alkylating agents. The reaction selectivity and mechanistic experiments suggest that carbenes/carbenoid intermediates are not involved in the reaction pathway, instead radical formation is proposed.

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