Organic Molecule-Ionic Solids of Structurally Mismatched Ion Pairs Formed via Attractive Interactions

Author(s):  
Jiang-Bo Ming ◽  
Xiao Li ◽  
Jing Li ◽  
Wei Yu ◽  
Wei Wang
2000 ◽  
Vol 55 (8) ◽  
pp. 738-752 ◽  
Author(s):  
Oliver Moers ◽  
Karna Wijaya ◽  
Ilona Lange ◽  
Armand Blaschette ◽  
Peter G. Jones

As an exercise in crystal engineering, low-temperature X-ray structures were determined for six rationally designed ionic solids of general formula BH+(MeSO2)2N−, where BH+ is 2-aminopyridinium (2, monoclinic, space group P21/c, Z = 4), 2-aminopyrimidinium (3, orthorhombic, Pbca, Z = 8), 2-aminothiazolium (4, orthorhombic, Pbcn, Z = 8), 2-amino-6-methylpyridinium (5, solvated with 0.5 H20, monoclinic, C2/c, Z = 8), 2-amino-1,3,4-thiadiazolium (6, triclinic, P1̄, Z = 2), or 2-amino-4,6-dimethylpyrimidinium (7, orthorhombic. Fdd2, Z = 16). The onium cations in question exhibit a trifunctional hydrogen-bond donor sequence H − N (H*)-C (sp2) − N − H , which is complementary to an O − S (sp3)−N fragment of the anion and simultaneously expected to form a third hydrogen bond via the exocyclic N − H* donor. Consequently, all the crystal packings contain cation-anion pairs assembled by an N − H ∙∙∙ N and an N −H ∙∙∙ O hydrogen bond, these substructures being mutually associated through an N − H* ∙∙∙ O bond. For the robust eight-membered ring synthon within the ion pairs [graph set N2 = R22(8), antidromic], two supramolecular isomers were observed: In 2 and 3, N − H ∙∙∙ N originates from the ring NH donor and N − H ∙∙∙ O from the exocyclic amino group, whereas in 4-7 these connectivities are reversed. The third hydrogen bond, N − H*∙∙∙ O , leads either to chains of ion pairs (generated by a 21 transformation in 2-4 or by a glide plane in 5) or to cyclic dimers of ion pairs (Ci symmetric in 6, C2-symmetric in 7). The overall variety of motifs observed in a small number of structures reflects the limits imposed on the prediction of hydrogen bonding patterns. Owing to the excess of potential acceptors over traditional hydrogen-bond donors, several of the structures display prominent non-classical secondary bonding. Thus, the cyclodimeric units of 6 are associated into strands through short antiparallel O ∙∙∙ S(cation) interactions. In the hemihydrate 5, two independent C-H(cation) ∙∙∙ O bonds generate a second antidromic R22(8) pattern, leading to sheets composed of N − H ∙∙∙ N/O connected catemers; the water molecules are alternately sandwiched between and O - H ∙∙∙ O bonded to the sheets to form bilayers, which are cross-linked by a third C − H (cation ) ∙∙∙ O contact. The roof-shaped cyclodimers occurring in 7 occupy the polar C2 axes parallel to z and build up hollow Car− H ∙∙∙ O bonded tetrahedral lattices; in order to fill their large empty cavities, five translationally equivalent lattices mutually interpenetrate.


2004 ◽  
Vol 59 (7) ◽  
pp. 747-756 ◽  
Author(s):  
Karna Wijaya ◽  
Oliver Moers ◽  
Dagmar Henschel ◽  
Armand Blaschette ◽  
Peter G. Jones

In order to study hydrogen bonding networks and packing arrangements, preparations and lowtemperature X-ray structures are reported for three ionic solids of general formula BH+(MeSO2)2N−, where BH+ is 2,6-diamino-4-phenyl-1,3,5-triazin-1-ium (compound 1, tetragonal, space group P4̅21c, Z = 8), 2,4,6-triamino-1,3,5-triazinium or melaminium (2, monoclinic, P21/c, Z = 4), and 2,4-diamino-6-methyl-1,3,5-triazin-1-ium (3, triclinic, P1̅, Z = 2). The asymmetric units consist of cation-anion pairs that display in 1 a [DDD:AAA] three-point hydrogen bond pattern formed by two lateral N-H···O bonds and a central N+-H···N interaction, in 2 a related pattern, in which the substantial lateral offset of the ions causes the two-centre H bonds to split up into three-centre bonds, and in 3 a [DD:AA] two-point pattern formed by an N-H···N and an N+-H···O interaction. All NH donors that are not involved in the ion pairs use sulfonyl oxygen atoms and/or non-protonated nitrogen ring-atoms as acceptors to form, in 1 and 3, discrete cation-anion strands, and in 2 similar strands associated into a three-dimensional network via one independent N-H···O bond. The packing topologies of the strands may be viewed as supramolecular analogues to molecular arrangements occurring in crystalline polyaromatic hydrocarbons, viz. the sandwich-herringbone pattern in 1 (sustained by π···π stacking of the triazine rings within the sandwiches and a phenyl-phenyl C-H···π interaction between orthogonal sandwiches), the flattened or γ -type herringbone pattern in 2 (sustained by the unique N-H···O interaction of orthogonal strands), and the pseudo-graphitic β -pattern in 3. In each packing, weak C-H···A hydrogen bonds (A = O, N) originate from the activated methyl groups of the anions and act as structure-supporting links between the cation-anion strands.


2021 ◽  
Author(s):  
Xiao Liang ◽  
Xu-Feng Luo ◽  
Zhi-Ping Yan ◽  
You-Xuan Zheng ◽  
Jing-Lin Zuo

1999 ◽  
Vol 54 (11) ◽  
pp. 1441-1449 ◽  
Author(s):  
Kama Wijaya ◽  
Oliver Moers ◽  
Armand Blaschette ◽  
Peter G. Jones

Syntheses and low-temperature X-ray structures are reported for three ionic solids of general formula BH+(MeSO2)2N-, where BH+ is 3,4,6,7,8,9-hexahydro-2H-pyrimido[1,2-a]pyrimidinium (1, monoclinic, space group P21/c), N,N′-diphenylformamidinium (2, monoclinic, P21/c), or 2-phenylaminopyridinium (3, triclinic, P1̄̄, two independent formula units). As a common feature, the onium cations in question exhibit a difunctional hydrogen-bond donor sequence H -N -C (sp2) - N - H geometrically complementary to an O - S - N fragment of the anion. Consequently, the three crystal packings consist of discrete cation-anion pairs (formula units) assembled by an N -H ··· N and an N - H O hydrogen bond. In both independent ion pairs of 3, the N -H ··· N bond originates from the pyridinium centre and the N - H - O bond from the amino group. The eight-membered ring [graph set N2 = R22(8), antidromic] that results in all these prototypical structures has potential as a new and robust supramolecular synthon. In each case, short C - H ··· O contacts with H ··· O ≤ 260 pm and C - H ··· O ≥ 140° are present; in 2, two Car - H ··· O hydrogen bonds are assisted by a C(formyl)- H ··· O contact and a π - π interaction to create a centrosymmetric formula unit dimer.


2010 ◽  
Vol 34 (12) ◽  
pp. 2932 ◽  
Author(s):  
Gurpaul Kochhar ◽  
Fedor Y. Naumkin
Keyword(s):  

Author(s):  
W. W. Barker ◽  
W. E. Rigsby ◽  
V. J. Hurst ◽  
W. J. Humphreys

Experimental clay mineral-organic molecule complexes long have been known and some of them have been extensively studied by X-ray diffraction methods. The organic molecules are adsorbed onto the surfaces of the clay minerals, or intercalated between the silicate layers. Natural organo-clays also are widely recognized but generally have not been well characterized. Widely used techniques for clay mineral identification involve treatment of the sample with H2 O2 or other oxidant to destroy any associated organics. This generally simplifies and intensifies the XRD pattern of the clay residue, but helps little with the characterization of the original organoclay. Adequate techniques for the direct observation of synthetic and naturally occurring organoclays are yet to be developed.


1980 ◽  
Vol 77 ◽  
pp. 759-768 ◽  
Author(s):  
R. Stephen Berry
Keyword(s):  

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