Functional Group Distributions, Partition Coefficients, and Resistance Factors in Lipid Bilayers Using Site Identification by Ligand Competitive Saturation

Author(s):  
Christoffer Lind ◽  
Poonam Pandey ◽  
Richard W. Pastor ◽  
Alexander D. MacKerell
2017 ◽  
Vol 60 (3) ◽  
Author(s):  
Agustin Ibarra-Escutia ◽  
Alberto Rojas-Hernández ◽  
Annia Galano ◽  
Enrique Ángeles ◽  
Diana Martínez-Mendoza ◽  
...  

The pKa values for two compounds (LQM303 and LQM314) with antihypertensive properties were determined by UV spectroscopy (T = 310.15 K and I = 0.15 M) and by Capillary Zone Electrophoresis (T = 310.15 K and I = 0.05 M), using the program SQUAD. The partition coefficients (logP) between water and 1-octanol have also been determined experimentally, demonstrating that both compounds fulfill with the physicochemical parameter logP ≤ 5 of Lipinski´s rules. Calculations on the framework of Density Functional Theory have allowed identifying the functional group related to each pKa for each compound.


1989 ◽  
Vol 51 (2) ◽  
pp. 105-118 ◽  
Author(s):  
Panayiotis P. Constantinides ◽  
Lily Ghosaini ◽  
Naoyoshi Inouchi ◽  
Shinichi Kitamura ◽  
Ramakrishnan Seshadri ◽  
...  

2010 ◽  
Vol 98 (3) ◽  
pp. 282a-283a
Author(s):  
Mark Uline ◽  
Gabriel Longo ◽  
Michael Schick ◽  
Igal Szleifer

1984 ◽  
Vol 49 (1) ◽  
pp. 122-136 ◽  
Author(s):  
Miroslav Kuchař ◽  
Bohumila Brunová ◽  
Václav Rejholc ◽  
Magda Jelínková ◽  
Jiří Holubek ◽  
...  

The paper describes the reaction of arylacetones IX with triethyl phosphonoacetate, producing esters of 4-aryl-3-methyl-2-butenoic acid, X, and 4-aryl-3-methyl-3-butenoic acid, X'. Their hydrolysis gave a mixture of the isomeric acids I and I', whose composition was investigated by 1H NMR spectra. Also prepared were 3-methyl-3-phenyl-2-propenoic acids, II, 2-aryl-2-hydroxypropanoic acids, IV, and substituted α-benzyloxyphenylacetic acids, V. These acids, along with aryloxoaliphatic acids III, were investigated for efficacy in activation of fibrinolysis. The lipophilicites of the acids studied were determined either through the partition coefficients (acids Ia and IIa), using a system n-octanol-water (pH 3.5) or by partition chromatography. The experimental values of log Pwere compared with those calculated from the fragmental constants f and the parameters π. With the acids V the decrease in lipophilicity was similar to that observed with arylalkoxyaliphatic acids. With the acids, I, I' and II the fibrinolytic capacity was linearly proportional to lipophilicity. Although we evaluated fibrinolytic capacity of mixtures of the acids I and I', the linear relation was in agreement with that derived previously for a group of arylaliphatic acids. The presence of a functional group on the connecting chain in the acids III and IV had a negative effect on the fibrinolytic capacity. The decrease in fibrinolytic capacity might be due the functional groups being capable of forming hydrogen bonds.


2007 ◽  
Vol 131 (1) ◽  
pp. 77-85 ◽  
Author(s):  
John F. Nagle ◽  
John C. Mathai ◽  
Mark L. Zeidel ◽  
Stephanie Tristram-Nagle

Recently measured water permeability through bilayers of different lipids is most strongly correlated with the area per lipid A rather than with other structural quantities such as the thickness. This paper presents a simple three-layer theory that incorporates the area dependence in a physically realistic way and also includes the thickness as a secondary modulating parameter. The theory also includes the well-known strong correlation of permeability upon the partition coefficients of general solutes in hydrocarbon environments (Overton's rule). Two mathematical treatments of the theory are given; one model uses discrete chemical kinetics and one model uses the Nernst-Planck continuum equation. The theory is fit to the recent experiments on water permeability in the accompanying paper.


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