Differential Pharmacophore Definition of the cAMP Binding Sites of Neuritogenic cAMP Sensor-Rapgef2, Protein Kinase A, and Exchange Protein Activated by cAMP in Neuroendocrine Cells Using an Adenine-Based Scaffold

2017 ◽  
Vol 8 (7) ◽  
pp. 1500-1509 ◽  
Author(s):  
Andrew C. Emery ◽  
Ryan A. Alvarez ◽  
Maribeth V. Eiden ◽  
Wenqin Xu ◽  
Fabrice G. Siméon ◽  
...  
2005 ◽  
Vol 19 (1) ◽  
pp. 163-174 ◽  
Author(s):  
Amandine Gautier-Stein ◽  
Gilles Mithieux ◽  
Fabienne Rajas

Abstract Glucose-6-phosphatase (Glc6Pase) is the last enzyme of gluconeogenesis and is only expressed in the liver, kidney, and small intestine. In these tissues, the mRNA and its activity are increased when cAMP levels increased (e.g. in fasting or diabetes). We first report that a proximal region (within −200 bp relative to the transcription start site) and a distal region (−694/−500 bp) are both required for a potent cAMP and a protein kinase A (PKA) responsiveness of the Glc6Pase promoter. Using different molecular approaches, we demonstrate that hepatocyte nuclear factor (HNF4α), CAAT/ enhancer-binding protein-α (C/EBPα), C/EBPβ, and cAMP response element-binding protein (CREB) are involved in the potentiated PKA responsiveness: in the distal region, via one HNF4α- and one C/EBP-binding sites, and in the proximal region, via two HNF4α and two CREB-binding sites. We also show that HNF4α, C/EBPα, and C/EBPβ are constitutively bound to the endogenous Glc6Pase gene, whereas CREB and CREB-binding protein (CBP) will be bound to the gene upon stimulation by cAMP. These data strongly suggest that the cAMP responsiveness of the Glc6Pase promoter requires a tight cooperation between a proximal and a distal region, which depends on the presence of several HNF4α-, C/EBP-, and CREB-binding sites, therefore involving an intricate association of hepatic and ubiquitous transcription factors.


2002 ◽  
Vol 159 (1) ◽  
pp. 66-73 ◽  
Author(s):  
Yogesh Dwivedi ◽  
Robert R. Conley ◽  
Rosalinda C. Roberts ◽  
Carol A. Tamminga ◽  
Ghanshyam N. Pandey

Synapse ◽  
2003 ◽  
Vol 48 (3) ◽  
pp. 131-137 ◽  
Author(s):  
Cynthia A. Crawford ◽  
Michael T. Williams ◽  
Eva R. Newman ◽  
Sanders A. McDougall ◽  
Charles V. Vorhees

2005 ◽  
Vol 174 (2) ◽  
pp. 595-599 ◽  
Author(s):  
David M. Aronoff ◽  
Claudio Canetti ◽  
Carlos H. Serezani ◽  
Ming Luo ◽  
Marc Peters-Golden

2018 ◽  
Vol 115 (15) ◽  
pp. 3852-3857 ◽  
Author(s):  
Piotr Setny ◽  
Marta D. Wiśniewska

Substrate binding cooperativity in protein kinase A (PKA) seems to involve allosteric coupling between the two binding sites. It received significant attention, but its molecular basis still remains not entirely clear. Based on long molecular dynamics of PKA and its complexes, we characterized an allosteric pathway that links ATP binding to the redistribution of states adopted by a protein substrate positioning segment in favor of those that warrant correct binding. We demonstrate that the cooperativity mechanism critically depends on the presence of water in two distinct, buried hydration sites. One holds just a single water molecule, which acts as a switchable hydrogen bond bridge along the allosteric pathway. The second, filled with partially disordered solvent, is essential for providing a smooth free energy landscape underlying conformational transitions of the peptide binding region. Our findings remain in agreement with experimental data, also concerning the cooperativity abolishing effect of the Y204A mutation, and indicate a plausible molecular mechanism contributing to experimentally observed binding cooperativity of the two substrates.


2010 ◽  
Vol 162 (1) ◽  
pp. 193-209 ◽  
Author(s):  
Sara S Roscioni ◽  
Bart GJ Dekkers ◽  
Alwin G Prins ◽  
Mark H Menzen ◽  
Herman Meurs ◽  
...  

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