Internal Fragments Generated from Different Top-Down Mass Spectrometry Fragmentation Methods Extend Protein Sequence Coverage

Increased Single-Spectrum Top-Down Protein Sequence Coverage in Trapping Mass Spectrometers with Chimeric Ion Loading

Analytical Chemistry ◽

10.1021/acs.analchem.0c01064 ◽

2020 ◽

Vol 92 (18) ◽

pp. 12193-12200

Author(s):

Chad R. Weisbrod ◽

Lissa C. Anderson ◽

Joseph B. Greer ◽

Caroline J. DeHart ◽

Christopher L. Hendrickson

Keyword(s):

Protein Sequence ◽

Sequence Coverage ◽

Top Down ◽

Single Spectrum ◽

Mass Spectrometers ◽

Correlation between peak capacity and protein sequence coverage in proteomics analysis by liquid chromatography-mass spectrometry/mass spectrometry

Journal of Chromatography A ◽

10.1016/j.chroma.2010.05.015 ◽

2010 ◽

Vol 1217 (29) ◽

pp. 4779-4783 ◽

Cited By ~ 17

Author(s):

Jacob N. Fairchild ◽

Matthew J. Walworth ◽

Krisztián Horváth ◽

Georges Guiochon

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Protein Sequence ◽

Peak Capacity ◽

Liquid Chromatography Mass Spectrometry ◽

Sequence Coverage ◽

Proteomics Analysis ◽

Chromatography Mass Spectrometry ◽

Mass Spectrometry Mass Spectrometry ◽

Citraconylation—a simple method for high protein sequence coverage in MALDI-TOF mass spectrometry

Biochemical and Biophysical Research Communications ◽

10.1016/s0006-291x(03)00898-2 ◽

2003 ◽

Vol 305 (4) ◽

pp. 1091-1093 ◽

Cited By ~ 10

Author(s):

Vojtěch Kadlčı́k ◽

Martin Strohalm ◽

Milan Kodı́ček

Keyword(s):

Mass Spectrometry ◽

Protein Sequence ◽

High Protein ◽

Sequence Coverage ◽

Simple Method ◽

Maldi Tof Mass Spectrometry ◽

Maldi Tof ◽

A spectrum graph-based protein sequence filtering algorithm for proteoform identification by top-down mass spectrometry

2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2017.8217653 ◽

2017 ◽

Author(s):

Runmin Yang ◽

Daming Zhu ◽

Qiang Kou ◽

Poornima Bhat-Nakshatri ◽

Harikrishna Nakshatri ◽

...

Keyword(s):

Mass Spectrometry ◽

Protein Sequence ◽

Top Down ◽

Filtering Algorithm ◽

Spectrum Graph ◽

Individual Ion Mass Spectrometry Enhances the Sensitivity and Sequence Coverage of Top-Down Mass Spectrometry

Journal of Proteome Research ◽

10.1021/acs.jproteome.9b00797 ◽

2020 ◽

Vol 19 (3) ◽

pp. 1346-1350 ◽

Cited By ~ 2

Author(s):

Jared O. Kafader ◽

Kenneth R. Durbin ◽

Rafael D. Melani ◽

Benjamin J. Des Soye ◽

Luis F. Schachner ◽

...

Keyword(s):

Mass Spectrometry ◽

Sequence Coverage ◽

Top Down ◽

Individual Ion ◽

Ion Mass Spectrometry ◽

Increasing Top-Down Mass Spectrometry Sequence Coverage by an Order of Magnitude through Optimized Internal Fragment Generation and Assignment

Analytical Chemistry ◽

10.1021/acs.analchem.0c04670 ◽

2021 ◽

Vol 93 (16) ◽

pp. 6355-6362

Author(s):

Nicholas D. Schmitt ◽

Joshua M. Berger ◽

Jeremy B. Conway ◽

Jeffrey N. Agar

Keyword(s):

Mass Spectrometry ◽

Sequence Coverage ◽

Top Down ◽

Order Of Magnitude ◽

Internal Fragment ◽

Total Retention Liquid Chromatography–Mass Spectrometry to Achieve Maximum Protein Sequence Coverage

Analytical Chemistry ◽

10.1021/acs.analchem.0c04292 ◽

2021 ◽

Author(s):

Mark E. Jennings ◽

Jay R. Silveira ◽

Kimberly M. Treier ◽

Paula B. Tracy ◽

Dwight E. Matthews

Keyword(s):

Mass Spectrometry ◽

Liquid Chromatography ◽

Protein Sequence ◽

Liquid Chromatography Mass Spectrometry ◽

Sequence Coverage ◽

Chromatography Mass Spectrometry ◽

Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top-Down Mass Spectrometry

PROTEOMICS ◽

10.1002/pmic.201700306 ◽

2018 ◽

Vol 18 (3-4) ◽

pp. 1700306 ◽

Cited By ~ 8

Author(s):

Qiang Kou ◽

Si Wu ◽

Xiaowen Liu

Keyword(s):

Mass Spectrometry ◽

Protein Sequence ◽

Systematic Evaluation ◽

Top Down ◽

Filtering Algorithms ◽

An Improved Top-Down Mass Spectrometry Characterization of Chlamydomonas reinhardtii Histones and Their Post-translational Modifications

Journal of the American Society for Mass Spectrometry ◽

10.1021/jasms.1c00029 ◽

2021 ◽

Author(s):

Sarah R. Rommelfanger ◽

Mowei Zhou ◽

Henna Shaghasi ◽

Shin-Cheng Tzeng ◽

Bradley S. Evans ◽

...

Keyword(s):

Mass Spectrometry ◽

Chlamydomonas Reinhardtii ◽

Top Down ◽

Post Translational Modifications ◽

Structural O-Glycoform Heterogeneity of the SARS-CoV-2 Spike Protein Receptor-Binding Domain Revealed by Top-Down Mass Spectrometry

Journal of the American Chemical Society ◽

10.1021/jacs.1c02713 ◽

2021 ◽

Author(s):

David S. Roberts ◽

Morgan Mann ◽

Jake A. Melby ◽

Eli J. Larson ◽

Yanlong Zhu ◽

...

Keyword(s):

Mass Spectrometry ◽

Receptor Binding ◽

Binding Domain ◽

Spike Protein ◽

Receptor Binding Domain ◽

Top Down ◽

Protein Receptor ◽