Electron−Nuclear and Electron−Electron Double Resonance Spectroscopies Show that the Primary Quinone Acceptor QAin Reaction Centers from Photosynthetic BacteriaRhodobacter sphaeroidesRemains in the Same Orientation Upon Light-Induced Reduction

2010 ◽  
Vol 114 (50) ◽  
pp. 16894-16901 ◽  
Author(s):  
Marco Flores ◽  
Anton Savitsky ◽  
Mark L. Paddock ◽  
Edward C. Abresch ◽  
Alexander A. Dubinskii ◽  
...  
2018 ◽  
Vol 4 (4) ◽  
pp. 50 ◽  
Author(s):  
Klaus Möbius ◽  
Wolfgang Lubitz ◽  
Nicholas Cox ◽  
Anton Savitsky

In this review on advanced biomolecular EPR spectroscopy, which addresses both the EPR and NMR communities, considerable emphasis is put on delineating the complementarity of NMR and EPR regarding the measurement of interactions and dynamics of large molecules embedded in fluid-solution or solid-state environments. Our focus is on the characterization of protein structure, dynamics and interactions, using sophisticated EPR spectroscopy methods. New developments in pulsed microwave and sweepable cryomagnet technology as well as ultrafast electronics for signal data handling and processing have pushed the limits of EPR spectroscopy to new horizons reaching millimeter and sub-millimeter wavelengths and 15 T Zeeman fields. Expanding traditional applications to paramagnetic systems, spin-labeling of biomolecules has become a mainstream multifrequency approach in EPR spectroscopy. In the high-frequency/high-field EPR region, sub-micromolar concentrations of nitroxide spin-labeled molecules are now sufficient to characterize reaction intermediates of complex biomolecular processes. This offers promising analytical applications in biochemistry and molecular biology where sample material is often difficult to prepare in sufficient concentration for NMR characterization. For multifrequency EPR experiments on frozen solutions typical sample volumes are of the order of 250 μL (S-band), 150 μL (X-band), 10 μL (Q-band) and 1 μL (W-band). These are orders of magnitude smaller than the sample volumes required for modern liquid- or solid-state NMR spectroscopy. An important additional advantage of EPR over NMR is the ability to detect and characterize even short-lived paramagnetic reaction intermediates (down to a lifetime of a few ns). Electron–nuclear and electron–electron double-resonance techniques such as electron–nuclear double resonance (ENDOR), ELDOR-detected NMR, PELDOR (DEER) further improve the spectroscopic selectivity for the various magnetic interactions and their evolution in the frequency and time domains. PELDOR techniques applied to frozen-solution samples of doubly spin-labeled proteins allow for molecular distance measurements ranging up to about 100 Å. For disordered frozen-solution samples high-field EPR spectroscopy allows greatly improved orientational selection of the molecules within the laboratory axes reference system by means of the anisotropic electron Zeeman interaction. Single-crystal resolution is approached at the canonical g-tensor orientations—even for molecules with very small g-anisotropies. Unique structural, functional, and dynamic information about molecular systems is thus revealed that can hardly be obtained by other analytical techniques. On the other hand, the limitation to systems with unpaired electrons means that EPR is less widely used than NMR. However, this limitation also means that EPR offers greater specificity, since ordinary chemical solvents and matrices do not give rise to EPR in contrast to NMR spectra. Thus, multifrequency EPR spectroscopy plays an important role in better understanding paramagnetic species such as organic and inorganic radicals, transition metal complexes as found in many catalysts or metalloenzymes, transient species such as light-generated spin-correlated radical pairs and triplets occurring in protein complexes of photosynthetic reaction centers, electron-transfer relays, etc. Special attention is drawn to high-field EPR experiments on photosynthetic reaction centers embedded in specific sugar matrices that enable organisms to survive extreme dryness and heat stress by adopting an anhydrobiotic state. After a more general overview on methods and applications of advanced multifrequency EPR spectroscopy, a few representative examples are reviewed to some detail in two Case Studies: (I) High-field ELDOR-detected NMR (EDNMR) as a general method for electron–nuclear hyperfine spectroscopy of nitroxide radical and transition metal containing systems; (II) High-field ENDOR and EDNMR studies of the Oxygen Evolving Complex (OEC) in Photosystem II, which performs water oxidation in photosynthesis, i.e., the light-driven splitting of water into its elemental constituents, which is one of the most important chemical reactions on Earth.


1990 ◽  
Vol 45 (3-4) ◽  
pp. 258-264
Author(s):  
Jeff A. Nemson ◽  
Anastasios Melis

Abstract Illumination of thylakoid membranes in the presence of 3-(3′,4′-dichlorophenyl)-1,1-dimethyl urea (DCMU) causes the reduction of the primary quinone acceptor QA of photosystem II (PS II) and the storage of a positive charge on the donor side of the photochemical reaction center. These oxidation-reduction reactions are accompanied by characteristic changes of absorbance in the ultra-violet region of the spectrum. The PS II-related absorbance difference spectra (250 -350 nm) were compared in control and hydroxylamine-treated thylakoid membranes, and in thylakoids suspended in the presence of carbonyl cyanide-p-(trifluoromethoxy)- phenylhydrazone (FCCP). The light minus dark difference spectra were dominated by the Q-A minus QA difference spectrum. Qualitatively, the three spectra were identical in the 300 - 350 nm region, however, they showed distinct differences in the 250 - 300 nm region. The latter arose because of different contributions from the donor side of PS II in the thylakoid membrane of the three samples. The result suggested that FCCP acts as the ultimate electron donor in DCMU - poisoned chloroplasts. Therefore, the absorbance difference spectrum in the presence of FCCP reflected a contribution from the Q-A minus QA component only. Deconvolution of the absorbance difference spectra of control and hydroxylamine-treated thylakoids yielded difference spectra attributed to the oxidation of a component on the donor side of PS II. This component did not conform with the known Mn(III) → Mn(IV) transition. Rather, it indicated the oxidation of a modified form of Mn in the presence of DCMU , probably a Mn(II) → Mn(III) transition. The results are discussed in terms of the use of DCMU - poisoned thylakoid membranes in the quantitation of the primary quinone acceptor QA by spectrophotometric approaches.


BIOPHYSICS ◽  
2008 ◽  
Vol 53 (4) ◽  
pp. 291-295
Author(s):  
P. P. Knox ◽  
P. M. Krasilnikov ◽  
P. A. Mamonov ◽  
N. Kh. Seifullina ◽  
A. F. Uchoa ◽  
...  

1992 ◽  
Vol 47 (1-2) ◽  
pp. 57-62 ◽  
Author(s):  
Suleyman I. Allakhverdiev ◽  
Vyacheslav V. Klimov

Abstract The effects of reversible manganese extraction on NADP+ photoreduction were studied with higher plant subchloroplast preparations of photosystem II (PS II). Under anaerobic conditions, when the reaction centers (RCs) of PS II are “closed” (i.e. in the state [P680 Pheo] QA), and in the presence of ferredoxin-ferredoxin-NADP+ reductase, NADP+ reduction is observed at a rate of 0.8 -1.1 nmol/mg × chlorophyll × h. After complete removal of manganese from PS II, the rate of NADP+ reduction is reduced 40 - 50-fold. Upon the addition of Mn at a concentration of approx. 4 Mn atoms per reaction center, the NADP+ reduction is restored up to 85 -90% of the initial value. When half of this amount of Mn is combined with about 40 times of the equivalent concentration of other divalent ions (Ca2+, Sr2+, Mg2+ etc.) the reaction is also reactivated. Dinoseb (10-6 m) an inhibitor of electron transfer in PS II prevents NADP+ photoreduction. It is concluded that under conditions when the first quinone acceptor, QA, is in its reduced state (QA-) electrons are transferred from reduced pheophytin (Pheo·̅) to NADP+, indicating that PS II can reduce NADP+ without the participation of PS I. On the basis of these and literature data, an alternate pathway for electron phototransfer in PS II reaction centers of higher plants is suggested. Some problems concerning the Z-scheme are discussed.


1984 ◽  
Vol 39 (5) ◽  
pp. 382-385 ◽  
Author(s):  
Howard H. Robinson ◽  
Julian J. Eaton-Rye ◽  
Jack J. S. van Rensen ◽  

Chloroplast thylakoid membranes depleted of bicarbonate exhibit a slowed oxidation of the primary quinone acceptor (Qᴀ) by the secondary quinone acceptor (Qв) of photosystem II. The kinetics of these slowed reactions have been followed by using short xenon flashes of light both to excite photosystem II and to probe the redox state of Qᴀ. Thylakoids incubated with formate but not depleted of bicarbonate showed the same pattern of slowed reaction kinetics of the quinone acceptors as seen in bicarbonate-depleted| thylakoids. This led us to conclude that there was a simple competition between bicarbonate and formate at this site; however, steady-state electron transfer measured with an oxygen electrode showed that although the bicarbonate- depleted thylakoids were indeed inhibited, rates in the formate-incubated thylakoids were only slightly slowed. We suggest that the inhibition seen at the quinone acceptor site of photosystem II depends in a subtle way upon the rate of exchange of bicarbonate and formate at this site.


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