Oxygen Entry through Multiple Pathways in T-State Human Hemoglobin

2013 ◽  
Vol 117 (20) ◽  
pp. 6082-6091 ◽  
Author(s):  
Masayoshi Takayanagi ◽  
Ikuo Kurisaki ◽  
Masataka Nagaoka
Keyword(s):  
Author(s):  
Xinhua Ji ◽  
Michael Braxenthaler ◽  
John Moult ◽  
Clara Fronticelli ◽  
Enrico Bucci ◽  
...  
Keyword(s):  

IUBMB Life ◽  
1999 ◽  
Vol 47 (6) ◽  
pp. 991-995 ◽  
Author(s):  
Paolo Ascenzi ◽  
Marco Colasanti ◽  
Mauro Fasano ◽  
Alberto Bertollini
Keyword(s):  

1995 ◽  
Vol 248 (1) ◽  
pp. 136-150 ◽  
Author(s):  
Jeffrey S. Kavanaugh ◽  
David R. Chafin ◽  
Arthur Arnone ◽  
Andrea Mozzarelli ◽  
Claudio Rivetti ◽  
...  

2019 ◽  
Author(s):  
Vytautas Gapsys ◽  
Bert L. de Groot

AbstractA recent molecular dynamics investigation into the stability of hemoglobin concluded that the unliganded protein is only stable in the T state when a solvent box is used in the simulations that is ten times larger than what is usually employed. Here, we express three main concerns about that study. In addition, we show that with an order of magnitude more statistics, the reported box size dependence is not reproducible. Overall, no significant effects on the kinetics or thermodynamics of conformational transitions were observed.


eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Vytautas Gapsys ◽  
Bert L de Groot

A recent molecular dynamics investigation into the stability of hemoglobin concluded that the unliganded protein is only stable in the T state when a solvent box is used in the simulations that is ten times larger than what is usually employed (El Hage et al., 2018). Here, we express three main concerns about that study. In addition, we find that with an order of magnitude more statistics, the reported box size dependence is not reproducible. Overall, no significant effects on the kinetics or thermodynamics of conformational transitions were observed.


Biochemistry ◽  
1998 ◽  
Vol 37 (13) ◽  
pp. 4358-4373 ◽  
Author(s):  
Jeffrey S. Kavanaugh ◽  
Jamie A. Weydert ◽  
Paul H. Rogers ◽  
Arthur Arnone

1997 ◽  
Vol 272 (52) ◽  
pp. 33077-33084 ◽  
Author(s):  
Stefano Bettati ◽  
Laura D. Kwiatkowski ◽  
Jeffrey S. Kavanaugh ◽  
Andrea Mozzarelli ◽  
Arthur Arnone ◽  
...  

2019 ◽  
Author(s):  
Francis Knowles ◽  
Douglas Magde

<p> The dimensionless equilibrium constant for the allosteric conformation change, K<sub>ΔC</sub> = 0.02602 (Knowles & Magde, linked ms 2) following binding of O<sub>2</sub> by α-chains in <sup>T</sup>state Hb<sub>4</sub>/BPG (whole blood under standard conditions) is shown to be comprised of: (i) an endothermic change in conformation, from <sup>T</sup>state to <sup>R</sup>state, of 24.3 kJ/mol; (ii) exothermic conversion of <sup>T</sup>state <sup>T</sup>αO<sub>2</sub>-chains to <sup>R</sup>state <sup>R</sup>αO<sub>2</sub>-chains of -13.8 kJ/mol; (iii)exothermic binding of BPG by R-states. Eq. (1) defines the component steps whereby the <sup>T</sup>state conformation is converted to the <sup>R</sup>state conformation.</p> <p>ΔG<sup>o</sup>(<sup>R</sup>(Hb<sub>4</sub>), BPG) describes the endothermic decomposition of the binary complex, <sup>T</sup>Hb<sub>4</sub>/BPG into <sup>R</sup>Hb<sub>4</sub> and BPG, equal to + 33.7 kJ/mol (DeBruin et al. (1973). J. Biol. Chem. <u>248</u>, 2774-2777). ΔG<sup>o</sup> for the equilibrium constant for ΔG<sup>O</sup>(K<sub>ΔC</sub>) and Σ ΔG<sup>o</sup> for binding of O<sub>2</sub> by the pair of equivalent <sup>T</sup>state α-chains, ΔG<sup>O</sup>(<sup>T</sup>α<sup>*</sup>O<sub>2</sub>), + 9.41 kJ/mol and – 49.6 kJ/mol, respectively, are determined by fitting of O<sub>2</sub> equilibrium binding data to the Perutz-Adair equation. ΔG<sup>o</sup> for reaction of a pair of equivalent <sup>R</sup>state α-chains with O<sub>2</sub>, ΔG<sup>O</sup>(<sup>R</sup>αO<sub>2</sub>), was estimated from the known affinity of myoglobin for O<sub>2</sub> at 37<sup>o</sup>C (Theorell H. (1936). Biochem. Z., <u>268</u>, 73-81), -63.4 kJ/mol. The unknown quantity, ∆G<sup>O</sup>(<sup>R</sup>(HbO<sub>2</sub>)<sub>4</sub>/BPG), was obtained by solving Eq. (1), being -10.5 kJ/mol, K (<sup>R</sup>(HbO<sub>2</sub>)<sub>4</sub>/BPG) = 58.4 L/mol. The value of the equilibrium constant for binding BPG to R-state conformations represents 0.0073% of the value of the binding constant of BPG to <sup>T</sup>state conformations: 800,000 L/mol. The value of K<sub>ΔC</sub>; (i) accounts for the ability of O<sub>2</sub> to escape, virtually unhindered from rbcs and (ii) provides a biophysical basis for manifestation of high resting rates of metabolism in warm blooded species.</p>


2022 ◽  
Vol 12 (1) ◽  
Author(s):  
Amanat Ali ◽  
Soja Saghar Soman ◽  
Ranjit Vijayan

AbstractHemoglobin is one of the most widely studied proteins genetically, biochemically, and structurally. It is an oxygen carrying tetrameric protein that imparts the characteristic red color to blood. Each chain of hemoglobin harbors a heme group embedded in a hydrophobic pocket. Several studies have investigated structural variations present in mammalian hemoglobin and their functional implications. However, camel hemoglobin has not been thoroughly explored, especially from a structural perspective. Importantly, very little is known about how the heme group interacts with hemoglobin under varying conditions of osmolarity and temperature. Several experimental studies have indicated that the tense (T) state is more stable than the relaxed (R) state of hemoglobin under normal physiological conditions. Despite the fact that R state is less stable than the T state, no extensive structural dynamics studies have been performed to investigate global quaternary transitions of R state hemoglobin under normal physiological conditions. To evaluate this, several 500 ns all-atom molecular dynamics simulations were performed to get a deeper understanding of how camel hemoglobin behaves under stress, which it is normally exposed to, when compared to human hemoglobin. Notably, camel hemoglobin was more stable under physiological stress when compared to human hemoglobin. Additionally, when compared to camel hemoglobin, cofactor-binding regions of hemoglobin also exhibited more fluctuations in human hemoglobin under the conditions studied. Several differences were observed between the residues of camel and human hemoglobin that interacted with heme. Importantly, distal residues His58 of α hemoglobin and His63 of β hemoglobin formed more sustained interactions, especially at higher temperatures, in camel hemoglobin. These residues are important for oxygen binding to hemoglobin. Thus, this work provides insights into how camel and human hemoglobin differ in their interactions under stress.


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