Artificial Decoy Spectral Libraries for False Discovery Rate Estimation in Spectral Library Searching in Proteomics

2010 ◽  
Vol 9 (1) ◽  
pp. 605-610 ◽  
Author(s):  
Henry Lam ◽  
Eric W. Deutsch ◽  
Ruedi Aebersold
Keyword(s):  
False Discovery Rate ◽  
Spectral Library ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation ◽  
Spectral Libraries

Reverse and Random Decoy Methods for False Discovery Rate Estimation in High Mass Accuracy Peptide Spectral Library Searches

2018 ◽  
Vol 17 (2) ◽  
pp. 846-857 ◽  
Author(s):  
Zheng Zhang ◽  
Meghan Burke ◽  
Yuri A. Mirokhin ◽  
Dmitrii V. Tchekhovskoi ◽  
Sanford P. Markey ◽  
...  
Keyword(s):  
False Discovery Rate ◽  
Mass Accuracy ◽  
High Mass ◽  
High Mass Accuracy ◽  
Spectral Library ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation

False Discovery Rate Estimation for Hybrid Mass Spectral Library Search Identifications in Bottom-up Proteomics

2019 ◽  
Vol 18 (9) ◽  
pp. 3223-3234 ◽  
Author(s):  
Meghan C. Burke ◽  
Zheng Zhang ◽  
Yuri A. Mirokhin ◽  
Dmitrii V. Tchekovskoi ◽  
Yuxue Liang ◽  
...  
Keyword(s):  
False Discovery Rate ◽  
Mass Spectral Library ◽  
Spectral Library ◽  
Bottom Up ◽  
Library Search ◽  
Mass Spectral ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation

scholarly journals The effect of correlation in false discovery rate estimation

Biometrika ◽  
2011 ◽  
Vol 98 (1) ◽  
pp. 199-214 ◽  
Author(s):  
A. Schwartzman ◽  
X. Lin
Keyword(s):  
False Discovery Rate ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation

scholarly journals A Scalable Approach for Protein False Discovery Rate Estimation in Large Proteomic Data Sets

2015 ◽  
Vol 14 (9) ◽  
pp. 2394-2404 ◽  
Author(s):  
Mikhail M. Savitski ◽  
Mathias Wilhelm ◽  
Hannes Hahne ◽  
Bernhard Kuster ◽  
Marcus Bantscheff
Keyword(s):  
False Discovery Rate ◽  
Data Sets ◽  
Rate Estimation ◽  
Proteomic Data ◽  
False Discovery ◽  
False Discovery Rate Estimation

scholarly journals Local false discovery rate estimation using feature reliability in LC/MS metabolomics data

2015 ◽  
Vol 5 (1) ◽  
Author(s):  
Elizabeth Y. Chong ◽  
Yijian Huang ◽  
Hao Wu ◽  
Nima Ghasemzadeh ◽  
Karan Uppal ◽  
...  
Keyword(s):  
False Discovery Rate ◽  
Local False Discovery Rate ◽  
Metabolomics Data ◽  
Rate Estimation ◽  
False Discovery ◽  
False Discovery Rate Estimation
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